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Glis1 GLIS family zinc finger 1 [ Mus musculus (house mouse) ]

Gene ID: 230587, updated on 28-May-2016
Official Symbol
Glis1provided by MGI
Official Full Name
GLIS family zinc finger 1provided by MGI
Primary source
MGI:MGI:2386723
See related
Ensembl:ENSMUSG00000034762 Vega:OTTMUSG00000008920
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gli5; Gli6; GliH1
Orthologs
Location:
4; 4 C6
Exon count:
14
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 4 NC_000070.6 (107426640..107635061)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (107107324..107307664)

Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene Yip1 domain family, member 1 Neighboring gene replication factor C (activator 1) 5 pseudogene Neighboring gene NDC1 transmembrane nucleoporin Neighboring gene uncharacterized LOC102633643 Neighboring gene osteoclast stimulating factor 1 pseudogene Neighboring gene DMRT-like family B with proline-rich C-terminal, 1

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Preferred Names
zinc finger protein GLIS1
Names
GLI-Kruppel family member GLI6
GLI-similar 1
Glis1 Kruppel-like zinc finger protein
gli homologous protein 1
zinc finger transcription factor Gli5

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_147221.2NP_671754.2  zinc finger protein GLIS1

    See identical proteins and their annotated locations for NP_671754.2

    Status: VALIDATED

    Source sequence(s)
    AK145342, AL626784, AL627259, BC066157
    Consensus CDS
    CCDS38831.1
    UniProtKB/Swiss-Prot
    Q8K1M4
    Related
    ENSMUSP00000035650, OTTMUSP00000009291, ENSMUST00000046005, OTTMUST00000020258
    Conserved Domains (3) summary
    COG5048
    Location:431510
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:449476
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:435457
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000070.6 Reference GRCm38.p3 C57BL/6J

    Range
    107426640..107635061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006502972.2XP_006503035.1  

    Conserved Domains (3) summary
    COG5048
    Location:446525
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:464491
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:450472
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. XM_006502973.2XP_006503036.1  

    See identical proteins and their annotated locations for XP_006503036.1

    UniProtKB/Swiss-Prot
    Q8K1M4
    Conserved Domains (3) summary
    COG5048
    Location:431510
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:449476
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:435457
    ZF_C2H2; C2H2 Zn finger [structural motif]
  3. XM_006502974.2XP_006503037.1  

    See identical proteins and their annotated locations for XP_006503037.1

    UniProtKB/Swiss-Prot
    Q8K1M4
    Conserved Domains (3) summary
    COG5048
    Location:431510
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:449476
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:435457
    ZF_C2H2; C2H2 Zn finger [structural motif]
  4. XM_006502975.1XP_006503038.1  

    See identical proteins and their annotated locations for XP_006503038.1

    UniProtKB/Swiss-Prot
    Q8K1M4
    Conserved Domains (3) summary
    COG5048
    Location:431510
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:449476
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:435457
    ZF_C2H2; C2H2 Zn finger [structural motif]
  5. XM_011240485.1XP_011238787.1  

    Conserved Domains (3) summary
    COG5048
    Location:431525
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:449476
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:435457
    ZF_C2H2; C2H2 Zn finger [structural motif]
  6. XM_011240486.1XP_011238788.1  

    Conserved Domains (2) summary
    COG5189
    Location:437481
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:372391
    ZF_C2H2; C2H2 Zn finger [structural motif]

Alternate Mm_Celera

Genomic

  1. AC_000026.1 Alternate Mm_Celera

    Range
    105793618..105989289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)