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Ikbkap inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein [ Mus musculus (house mouse) ]

Gene ID: 230233, updated on 28-May-2016
Official Symbol
Ikbkapprovided by MGI
Official Full Name
inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated proteinprovided by MGI
Primary source
MGI:MGI:1914544
See related
Ensembl:ENSMUSG00000028431 Vega:OTTMUSG00000007272
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Elp1; IKAP; C78473; 6030413P05; 3110040G09Rik
Orthologs
Location:
4 B3; 4 31.66 cM
Exon count:
37
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 4 NC_000070.6 (56749680..56802331, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (56762552..56815203, complement)

Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene actin-like 7b Neighboring gene actin-like 7a Neighboring gene family with sequence similarity 206, member A Neighboring gene catenin (cadherin associated protein), alpha-like 1 Neighboring gene transmembrane protein 245 Neighboring gene microRNA 32

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
ATP binding ISO
Inferred from Sequence Orthology
more info
 
contributes_to RNA polymerase II core binding ISO
Inferred from Sequence Orthology
more info
 
phosphorylase kinase regulator activity ISO
Inferred from Sequence Orthology
more info
 
protein kinase activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
I-kappaB phosphorylation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
tRNA wobble uridine modification IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Elongator holoenzyme complex ISO
Inferred from Sequence Orthology
more info
 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
histone acetyltransferase complex ISO
Inferred from Sequence Orthology
more info
 
nucleolus ISO
Inferred from Sequence Orthology
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
transcription elongation factor complex ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
elongator complex protein 1
Names
IKK complex-associated protein
IKK-complex-associated protein IKAP
ikappaB kinase complex-associated protein
inhibitor of kappa light polypeptide enhancer in B-cells, kinase complex-associated protein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026079.3NP_080355.2  elongator complex protein 1

    See identical proteins and their annotated locations for NP_080355.2

    Status: VALIDATED

    Source sequence(s)
    AK032563, AK035944, AK076152, AK147153, AK165168
    Consensus CDS
    CCDS38765.1
    UniProtKB/Swiss-Prot
    Q7TT37
    Related
    ENSMUSP00000030140, OTTMUSP00000007743, ENSMUST00000030140, OTTMUST00000016798
    Conserved Domains (3) summary
    COG0457
    Location:8751101
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG5290
    Location:711276
    COG5290; IkappaB kinase complex, IKAP component [Transcription]
    pfam04762
    Location:1955
    IKI3; IKI3 family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000070.6 Reference GRCm38.p3 C57BL/6J

    Range
    56749680..56802331 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_390319.1 RNA Sequence

Alternate Mm_Celera

Genomic

  1. AC_000026.1 Alternate Mm_Celera

    Range
    56657583..56710224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)