RefSeqs maintained independently of Annotated Genomes
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001009566.1 → NP_001009566.1 calsyntenin-1 isoform 1 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AB020718, CB132727
- Consensus CDS
-
CCDS30580.1
- UniProtKB/Swiss-Prot
-
O94985
- Related
- ENSP00000366513, OTTHUMP00000001597, ENST00000377298, OTTHUMT00000004239
- Conserved Domains (2) summary
-
- cd11304
Location:168 – 258
Blast Score: 138
- Cadherin_repeat; Cadherin tandem repeat domain.
- cl00102
Location:362 – 510
Blast Score: 127
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
NM_014944.3 → NP_055759.3 calsyntenin-1 isoform 2 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks in alternate in-frame exon, compared to variant 1, resulting in a shorter isoform (2) that is missing an internal segment compared to isoform 1.
- Source sequence(s)
-
AF438482, AK001591, BC033902, CB132727
- Consensus CDS
-
CCDS105.1
- UniProtKB/TrEMBL
-
B3KMD3
- UniProtKB/Swiss-Prot
-
O94985
- Related
- ENSP00000354997, OTTHUMP00000001598, ENST00000361311, OTTHUMT00000004240
- Conserved Domains (2) summary
-
- cd11304
Location:41 – 149
Blast Score: 144
- Cadherin_repeat; Cadherin tandem repeat domain.
- cl00102
Location:352 – 500
Blast Score: 127
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
RefSeqs of Annotated Genomes: Build 37.3
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p5 Primary Assembly
Genomic
-
NC_000001.10 Reference GRCh37.p5 Primary Assembly
- Range
- 9789079..9884550, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000133.1 Alternate HuRef
- Range
- 8945184..9040629, complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)