Bpifb5 BPI fold containing family B, member 5 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Bpifb5provided by MGI
Official Full Name: BPI fold containing family B, member 5provided by MGI
Primary source: MGI:MGI:2385160
See related: Ensembl:ENSMUSG00000038572 AllianceGenome:MGI:2385160
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Lplunc5
Summary: Is expressed in olfactory epithelium. Orthologous to human BPIFB5P (BPI fold containing family B member 5, pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in ovary adult (RPKM 15.2), testis adult (RPKM 4.4) and 2 other tissues See more
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Genomic context

Location:: 2 H1; 2 76.28 cM

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	2	NC_000068.8 (154065662..154082822)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	2	NC_000068.7 (154223742..154240902)

Chromosome 2 - NC_000068.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Targeted (1)
Endonuclease-mediated (2)

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: long palate lung and nasal epithelium protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_144890.2 → NP_659139.2 long palate lung and nasal epithelium protein 5 precursor

See identical proteins and their annotated locations for NP_659139.2

Status: VALIDATED

Source sequence(s)

AK142982, AL732601

Consensus CDS

CCDS16928.1

UniProtKB/TrEMBL

Q3UQ05, Q8VEH9

Related

ENSMUSP00000046683.8, ENSMUST00000045959.8

Conserved Domains (1) summary

cl00188
Location:130 → 226

BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000068.8 Reference GRCm39 C57BL/6J

Range

154065662..154082822

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006499332.3 → XP_006499395.1 long palate lung and nasal epithelium protein 5 isoform X1

UniProtKB/TrEMBL

Q8VEH9

Conserved Domains (1) summary

cl00188
Location:80 → 176

BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...