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ZNF652 zinc finger protein 652 [ Homo sapiens (human) ]

Gene ID: 22834, updated on 7-May-2016
Official Symbol
ZNF652provided by HGNC
Official Full Name
zinc finger protein 652provided by HGNC
Primary source
HGNC:HGNC:29147
See related
Ensembl:ENSG00000198740 HPRD:18362; MIM:613907; Vega:OTTHUMG00000161322
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
Location:
17q21.32
Exon count:
8
Annotation release Status Assembly Chr Location
107 current GRCh38.p2 (GCF_000001405.28) 17 NC_000017.11 (49289206..49362473, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (47366568..47439835, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized FLJ40194 Neighboring gene microRNA 6129 Neighboring gene uncharacterized LOC102724596 Neighboring gene ribosomal protein L21 pseudogene 124 Neighboring gene prohibitin

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NHGRI GWAS Catalog

Description
A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple Loci implicated in sex steroid hormone regulation.
NHGRI GWA Catalog
Genome-wide association study identifies eight loci associated with blood pressure.
NHGRI GWA Catalog
Genome-wide association study identifies six new loci influencing pulse pressure and mean arterial pressure.
NHGRI GWA Catalog
Genome-wide association study of prostate cancer in men of African ancestry identifies a susceptibility locus at 17q21.
NHGRI GWA Catalog
Hundreds of variants clustered in genomic loci and biological pathways affect human height.
NHGRI GWA Catalog
Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
NHGRI GWA Catalog

Markers

Homology

Clone Names

  • KIAA0924, DKFZp781E2122

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145365.1NP_001138837.1  zinc finger protein 652

    See identical proteins and their annotated locations for NP_001138837.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC004797, AK292667, BC152440, DN998934
    Consensus CDS
    CCDS32677.1
    UniProtKB/Swiss-Prot
    Q9Y2D9
    UniProtKB/TrEMBL
    A8K9F2
    Related
    ENSP00000416305, OTTHUMP00000220046, ENST00000430262, OTTHUMT00000364525
    Conserved Domains (3) summary
    COG5048
    Location:439488
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:455478
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:387407
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. NM_014897.2NP_055712.1  zinc finger protein 652

    See identical proteins and their annotated locations for NP_055712.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC004797, BC152440
    Consensus CDS
    CCDS32677.1
    UniProtKB/Swiss-Prot
    Q9Y2D9
    Related
    ENSP00000354686, OTTHUMP00000220045, ENST00000362063, OTTHUMT00000364524
    Conserved Domains (3) summary
    COG5048
    Location:439488
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:455478
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:387407
    ZF_C2H2; C2H2 Zn finger [structural motif]

RNA

  1. NR_135579.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AW449799, BC034987, BF763222, BU838341, CN371383, DN998934

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 107 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p2 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p2 Primary Assembly

    Range
    49289206..49362473 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005257166.1XP_005257223.1  

    See identical proteins and their annotated locations for XP_005257223.1

    UniProtKB/TrEMBL
    D6RF85
    Related
    ENSP00000424848, OTTHUMP00000220047, ENST00000508237, OTTHUMT00000364526
    Conserved Domains (3) summary
    COG5048
    Location:259308
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam13465
    Location:275298
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:207227
    ZF_C2H2; C2H2 Zn finger [structural motif]

RNA

  1. XR_934424.1 RNA Sequence

  2. XR_934423.1 RNA Sequence

Alternate CHM1_1.1

Genomic

  1. NC_018928.2 Alternate CHM1_1.1

    Range
    47431795..47504982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)