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Zscan21 zinc finger and SCAN domain containing 21 [ Mus musculus (house mouse) ]

Gene ID: 22697, updated on 28-May-2016
Official Symbol
Zscan21provided by MGI
Official Full Name
zinc finger and SCAN domain containing 21provided by MGI
Primary source
MGI:MGI:99182
See related
Ensembl:ENSMUSG00000037017 Vega:OTTMUSG00000022636
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
RU49; Zfp38; Zfp-38; Zipro1; CTfin51; AI326272
Orthologs
Location:
5 G2; 5 76.96 cM
Exon count:
6
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 5 NC_000071.6 (138116899..138134265)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (138558133..138575489)

Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene sperm motility kinase 3C Neighboring gene zinc finger with KRAB and SCAN domains 1 Neighboring gene zinc finger protein 113 Neighboring gene COP9 signalosome subunit 6

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
RNA polymerase II core promoter proximal region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
transcription factor activity, sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
cell differentiation IEA
Inferred from Electronic Annotation
more info
 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
oogenesis IEA
Inferred from Electronic Annotation
more info
 
positive regulation of transcription from RNA polymerase II promoter IBA
Inferred from Biological aspect of Ancestor
more info
 
positive regulation of transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
 
positive regulation of transcription, DNA-templated IDA
Inferred from Direct Assay
more info
PubMed 
regulation of transcription, DNA-templated ISO
Inferred from Sequence Orthology
more info
 
spermatogenesis IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
zinc finger and SCAN domain-containing protein 21
Names
transcription factor RU49
zinc finger proliferation 1
zinc finger protein 38

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044703.2NP_001038168.1  zinc finger and SCAN domain-containing protein 21

    See identical proteins and their annotated locations for NP_001038168.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1,2,3 and 4 encode the same protein.
    Source sequence(s)
    AI326272, AK146875, BY293243, BY309906, BY654936, DV651309
    Consensus CDS
    CCDS19790.1
    UniProtKB/Swiss-Prot
    Q07231
    Related
    ENSMUSP00000106585, OTTMUSP00000025860, ENSMUST00000110960, OTTMUST00000054236
    Conserved Domains (6) summary
    smart00431
    Location:118230
    SCAN; leucine rich region
    cd07936
    Location:118202
    SCAN; SCAN oligomerization domain
    COG5048
    Location:339535
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam00096
    Location:526548
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:456481
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:472492
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. NM_001044704.2NP_001038169.1  zinc finger and SCAN domain-containing protein 21

    See identical proteins and their annotated locations for NP_001038169.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1,2,3 and 4 encode the same protein.
    Source sequence(s)
    AI326272, AK146776, AK146875, BY293243, BY654936, CF915830, DV651309
    Consensus CDS
    CCDS19790.1
    UniProtKB/Swiss-Prot
    Q07231
    Related
    ENSMUSP00000053430, OTTMUSP00000025861, ENSMUST00000062350, OTTMUST00000054237
    Conserved Domains (6) summary
    smart00431
    Location:118230
    SCAN; leucine rich region
    cd07936
    Location:118202
    SCAN; SCAN oligomerization domain
    COG5048
    Location:339535
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam00096
    Location:526548
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:456481
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:472492
    ZF_C2H2; C2H2 Zn finger [structural motif]
  3. NM_001044705.2NP_001038170.1  zinc finger and SCAN domain-containing protein 21

    See identical proteins and their annotated locations for NP_001038170.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Variants 1,2,3 and 4 encode the same protein.
    Source sequence(s)
    AI326272, AK146875, BY293243, BY309906, BY654936, DV651309
    Consensus CDS
    CCDS19790.1
    UniProtKB/Swiss-Prot
    Q07231
    Related
    ENSMUSP00000079557, OTTMUSP00000025862, ENSMUST00000080732, OTTMUST00000054238
    Conserved Domains (6) summary
    smart00431
    Location:118230
    SCAN; leucine rich region
    cd07936
    Location:118202
    SCAN; SCAN oligomerization domain
    COG5048
    Location:339535
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam00096
    Location:526548
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:456481
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:472492
    ZF_C2H2; C2H2 Zn finger [structural motif]
  4. NM_011757.3NP_035887.2  zinc finger and SCAN domain-containing protein 21

    See identical proteins and their annotated locations for NP_035887.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1,2,3 and 4 encode the same protein.
    Source sequence(s)
    AI326272, AK146875, BY293243, BY654936, DV651309
    Consensus CDS
    CCDS19790.1
    UniProtKB/Swiss-Prot
    Q07231
    Related
    ENSMUSP00000106586, OTTMUSP00000025859, ENSMUST00000110961, OTTMUST00000054235
    Conserved Domains (6) summary
    smart00431
    Location:118230
    SCAN; leucine rich region
    cd07936
    Location:118202
    SCAN; SCAN oligomerization domain
    COG5048
    Location:339535
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam00096
    Location:526548
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:456481
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:472492
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000071.6 Reference GRCm38.p3 C57BL/6J

    Range
    138116899..138134265
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011240942.1XP_011239244.1  

    See identical proteins and their annotated locations for XP_011239244.1

    UniProtKB/Swiss-Prot
    Q07231
    Conserved Domains (6) summary
    smart00431
    Location:118230
    SCAN; leucine rich region
    cd07936
    Location:118202
    SCAN; SCAN oligomerization domain
    COG5048
    Location:339535
    COG5048; FOG: Zn-finger [General function prediction only]
    pfam00096
    Location:526548
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:456481
    zf-H2C2_2; Zinc-finger double domain
    sd00017
    Location:472492
    ZF_C2H2; C2H2 Zn finger [structural motif]

Alternate Mm_Celera

Genomic

  1. AC_000027.1 Alternate Mm_Celera

    Range
    135096917..135114273
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)