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Trerf1 transcriptional regulating factor 1 [ Mus musculus (house mouse) ]

Gene ID: 224829, updated on 8-May-2016
Official Symbol
Trerf1provided by MGI
Official Full Name
transcriptional regulating factor 1provided by MGI
Primary source
MGI:MGI:2442086
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
RAPA; Trep132; AI429294; Trep-132; B830015H24; 9430096I18Rik
Orthologs
Location:
17; 17 C
Exon count:
19
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 17 NC_000083.6 (47140942..47359458)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (47277891..47496407)

Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene ribosomal protein L29 pseudogene Neighboring gene predicted gene, 41589 Neighboring gene predicted gene, 36715 Neighboring gene mitochondrial ribosomal protein S10 Neighboring gene guanylate cyclase activator 1B

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC118525

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
transcription factor activity, sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
transcription factor activity, sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
transcription factor binding IBA
Inferred from Biological aspect of Ancestor
more info
 
transcription factor binding ISO
Inferred from Sequence Orthology
more info
 
transcription regulatory region DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
positive regulation of transcription, DNA-templated ISO
Inferred from Sequence Orthology
more info
 
regulation of transcription from RNA polymerase II promoter IBA
Inferred from Biological aspect of Ancestor
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
histone deacetylase complex IBA
Inferred from Biological aspect of Ancestor
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
transcription factor complex IBA
Inferred from Biological aspect of Ancestor
more info
 
Preferred Names
transcriptional-regulating factor 1
Names
transcriptional regulating protein 132
transcriptional-regulating protein 132
zinc finger transcription factor TReP-132

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001097623.1NP_001091092.1  transcriptional-regulating factor 1 isoform 1

    See identical proteins and their annotated locations for NP_001091092.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    BC051645, BC059215, BC108416
    UniProtKB/Swiss-Prot
    Q8BXJ2
    Conserved Domains (5) summary
    smart00717
    Location:914959
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:807863
    ELM2; ELM2 domain
    pfam13912
    Location:512534
    zf-C2H2_6; C2H2-type zinc finger
    sd00017
    Location:10411063
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl21498
    Location:915959
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  2. NM_172622.2NP_766210.1  transcriptional-regulating factor 1 isoform 2

    See identical proteins and their annotated locations for NP_766210.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and uses an alternate in-frame splice site in the mid-coding region, compared to variant 1, resulting in a shorter protein (isoform 2).
    Source sequence(s)
    AK046822, BC051645, BU705739
    UniProtKB/Swiss-Prot
    Q8BXJ2
    Conserved Domains (5) summary
    smart00717
    Location:894939
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    pfam01448
    Location:787843
    ELM2; ELM2 domain
    pfam13912
    Location:512534
    zf-C2H2_6; C2H2-type zinc finger
    sd00017
    Location:10211043
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl21498
    Location:895939
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000083.6 Reference GRCm38.p3 C57BL/6J

    Range
    47140942..47359458
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000039.1 Alternate Mm_Celera

    Range
    50576035..50794248
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)