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Lin7c lin-7 homolog C (C. elegans) [ Mus musculus (house mouse) ]

Gene ID: 22343, updated on 28-May-2016
Official Symbol
Lin7cprovided by MGI
Official Full Name
lin-7 homolog C (C. elegans)provided by MGI
Primary source
MGI:MGI:1330839
See related
Ensembl:ENSMUSG00000027162 Vega:OTTMUSG00000015123
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Veli3; LIN-7C; MALS-3; LIN-7-C; AI303698; AU019331; AW125731; D2Ertd520e; 9130007B12Rik
Orthologs
Location:
2 E3; 2 56.65 cM
Exon count:
5
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 2 NC_000068.7 (109890878..109900937)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (109731035..109741094)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene high mobility group box 2 pseudogene Neighboring gene predicted gene, 39907 Neighboring gene pluripotency associated transcript 8 Neighboring gene leucine-rich repeat-containing G protein-coupled receptor 4

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC54626

Gene Ontology Provided by MGI

Function Evidence Code Pubs
L27 domain binding ISO
Inferred from Sequence Orthology
more info
 
PDZ domain binding ISO
Inferred from Sequence Orthology
more info
 
cytoskeletal protein binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein domain specific binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
exocytosis IBA
Inferred from Biological aspect of Ancestor
more info
 
maintenance of epithelial cell apical/basal polarity IBA
Inferred from Biological aspect of Ancestor
more info
 
morphogenesis of an epithelial sheet ISO
Inferred from Sequence Orthology
more info
 
neurotransmitter secretion IGI
Inferred from Genetic Interaction
more info
PubMed 
protein localization to basolateral plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
protein transport IEA
Inferred from Electronic Annotation
more info
 
transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
MPP7-DLG1-LIN7 complex ISO
Inferred from Sequence Orthology
more info
 
basolateral plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 
cell junction IEA
Inferred from Electronic Annotation
more info
 
cell-cell junction IBA
Inferred from Biological aspect of Ancestor
more info
 
cell-cell junction ISO
Inferred from Sequence Orthology
more info
 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
neuron projection IEA
Inferred from Electronic Annotation
more info
 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 
postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 
synapse IDA
Inferred from Direct Assay
more info
PubMed 
synapse ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
protein lin-7 homolog C
Names
lin 7 homolog c
mLin7C
mammalian lin-seven protein 3
veli-3
vertebrate homolog of C. elegans Lin-7 type 3
vertebrate lin-7 homolog 3

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011699.3NP_035829.1  protein lin-7 homolog C

    See identical proteins and their annotated locations for NP_035829.1

    Status: PROVISIONAL

    Source sequence(s)
    AL845423
    Consensus CDS
    CCDS16509.1
    UniProtKB/Swiss-Prot
    O88952
    Related
    ENSMUSP00000028583, OTTMUSP00000016097, ENSMUST00000028583, OTTMUST00000035872
    Conserved Domains (2) summary
    cd00992
    Location:91172
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam02828
    Location:1364
    L27; L27 domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p3 C57BL/6J

    Range
    109890878..109900937
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000024.1 Alternate Mm_Celera

    Range
    111051913..111061966
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)