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    FKTN fukutin [ Homo sapiens ]

    Gene ID: 2218, updated on 11-May-2012

    Summary

    Official Symbol
    FKTNprovided by HGNC
    Official Full Name
    fukutinprovided by HGNC
    Primary source
    HGNC:3622
    Locus tag
    RP11-235C23.1
    See related
    Ensembl:ENSG00000106692; HPRD:06308; MIM:607440; Vega:OTTHUMG00000020425
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FCMD; CMD1X; LGMD2M; MDDGA4; MDDGB4; MDDGC4; MGC126857; MGC134944; MGC134945; MGC138243
    Summary
    The protein encoded by this gene is a putative transmembrane protein that is localized to the cis-Golgi compartment, where it may be involved in the glycosylation of alpha-dystroglycan in skeletal muscle. The encoded protein is thought to be a glycosyltransferase and could play a role in brain development. Defects in this gene are a cause of Fukuyama-type congenital muscular dystrophy (FCMD), Walker-Warburg syndrome (WWS), limb-girdle muscular dystrophy type 2M (LGMD2M), and dilated cardiomyopathy type 1X (CMD1X). Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Nov 2010]

    Genomic context

    Location :
    9q31-q33
    Sequence :
    Chromosome: 9; NC_000009.11 (108320411..108403399)
    See FKTN in Epigenomics, MapViewer

    Chromosome 9 - NC_000009.11Genomic Context describing neighboring genes Neighboring gene solute carrier family 44, member 1 Neighboring gene fibronectin type III and SPRY domain containing 1-like Neighboring gene Ral GTPase activating protein, alpha subunit 1 (catalytic) pseudogene Neighboring gene serine/arginine-rich splicing factor 10 pseudogene Neighboring gene T-cell acute lymphocytic leukemia 2 Neighboring gene transmembrane protein 38B

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Phenotypes

    Cardiomyopathy, dilated, 1X

    Meta-analysis of genome-wide association data identifies two loci influencing age at menarche.

    Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 4

    Summary from GeneReviews: Go to GeneReviews

    Disease Characteristics
    Fukuyama congenital muscular dystrophy (FCMD) is characterized by hypotonia, symmetric generalized muscle weakness, and CNS migration disturbances that result in changes consistent with cobblestone (previously type II) lissencephaly with cerebral and cerebellar cortical dysplasia. Mild, typical, and severe phenotypes are recognized. Onset typically occurs in early infancy, with a poor suck, weak cry, and floppiness. Affected individuals have contractures of the hips, knees, and interphalangeal joints. Later features include myopathic facial appearance; pseudohypertrophy of the calves and forearms; motor and speech retardation and intellectual disability; convulsions; ophthalmologic abnormalities including visual impairment and retinal dysplasia; and progressive cardiac involvement in individuals over age ten years. Swallowing disturbance occurs in individuals with severe FCMD and in individuals over age ten years, leading to recurrent aspiration pneumonia and death.
    Diagnosis Testing
    The diagnosis of FCMD is established by clinical findings and characteristic findings on neuroimaging, electromyography, measurement of serum creatine kinase concentration, muscle biopsy, and molecular genetic testing. FKTN (formerly FCMD) is the only gene known to be associated with FCMD. Molecular genetic testing of FKTN is available on a clinical basis
    Genetic Counseling
    FCMD is inherited in an autosomal recessive manner. At conception, the sibs of an affected individual have a 25% chance of being affected, a 50% chance of being an asymptomatic carrier, and a 25% chance of being unaffected and not a carrier. Once an at-risk sib is known to be unaffected, the risk of his/her being a carrier is 2/3. When the mutations have been identified in the proband, carrier testing for at-risk family members and prenatal diagnosis for pregnancies at increased risk are possible.
    References

    Muscular dystrophy-dystroglycanopathy (congenital without mental retardation), type B, 4

    Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 4

    Walker-Warburg syndrome

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:108512 BioGRID:113387 CNBP    BioGRID  PubMed Affinity Capture-RNA 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    muscle organ development TAS
    Traceable Author Statement
    more info
    PubMed 
    negative regulation of JNK cascade IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    negative regulation of cell proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    nervous system development TAS
    Traceable Author Statement
    more info
    PubMed 
    regulation of protein glycosylation NAS
    Non-traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
     
    cis-Golgi network IDA
    Inferred from Direct Assay
    more info
    PubMed 
    endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    extracellular space TAS
    Traceable Author Statement
    more info
    PubMed 
    integral to membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    fukutin
    Names
    fukutin
    patient fukutin
    Fukuyama type congenital muscular dystrophy protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_008754.1 RefSeqGene

      Range
      5001..87989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001079802.1NP_001073270.1  fukutin isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer protein (a). Variants 1 and 2 encode the same isoform (a).
      Source sequence(s)
      AL158070, AL601876, BC117699, DA917113
      Consensus CDS
      CCDS6766.1
      UniProtKB/Swiss-Prot
      O75072
      Conserved Domains (2) summary
      PRK11568
      Location:230261
      Blast Score: 88
      PRK11568; hypothetical protein; Provisional
      cl01378
      Location:289327
      Blast Score: 121
      LicD; LicD family
    2. NM_001198963.1NP_001185892.1  fukutin isoform b

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. This results in a shorter protein (isoform b), compared to isoform a.
      Source sequence(s)
      AK300840, AL158070, AL601876, AW014603, BC117699
      Consensus CDS
      CCDS56580.1
      UniProtKB/TrEMBL
      B4DUX9
      UniProtKB/Swiss-Prot
      O75072
      Related
      ENSP00000350687, ENST00000357998
      Conserved Domains (2) summary
      PRK11568
      Location:230261
      Blast Score: 88
      PRK11568; hypothetical protein; Provisional
      cl01378
      Location:289327
      Blast Score: 121
      LicD; LicD family
    3. NM_006731.2NP_006722.2  fukutin isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 encode the same isoform (a).
      Source sequence(s)
      AL158070, AL601876, BC117699
      Consensus CDS
      CCDS6766.1
      UniProtKB/Swiss-Prot
      O75072
      Related
      ENSP00000223528, OTTHUMP00000021841, ENST00000223528, OTTHUMT00000053505
      Conserved Domains (2) summary
      PRK11568
      Location:230261
      Blast Score: 88
      PRK11568; hypothetical protein; Provisional
      cl01378
      Location:289327
      Blast Score: 121
      LicD; LicD family

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000009.11 Reference GRCh37.p5 Primary Assembly

      Range
      108320411..108403399
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000141.1 Alternate HuRef

      Range
      77921830..78004880
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AB038490.1 BAA94082.1
    genomic AL158070.11 CAC22162.1
      CAI39800.1
    genomic AL158070.11 CAC22162.1
      CAI39800.1
    genomic CH471105.1 EAW59001.1
    mRNA AB008226.1 BAA32000.1
    mRNA AB609007.1 BAL04096.1
    mRNA AK300840.1 BAG62491.1
    mRNA AK304460.1 BAG65276.1
    mRNA AL601876.1 None
    mRNA AW014603.1 None
    mRNA BC058842.1 None
    mRNA BC101808.1 AAI01809.1
    mRNA BC112038.1 AAI12039.1
    mRNA BC117699.1 AAI17700.1
    mRNA BC117700.1 AAI17701.1
    mRNA DA917113.1 None
    Protein Accession Links
    GenPept Link UniProtKB Link
    O75072.2 GenPept UniProtKB/Swiss-Prot:O75072

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