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    FANCF Fanconi anemia, complementation group F [ Homo sapiens (human) ]

    Gene ID: 2188, updated on 5-May-2013
    Official Symbol
    FANCFprovided by HGNC
    Official Full Name
    Fanconi anemia, complementation group Fprovided by HGNC
    Primary source
    HGNC:3587
    See related
    Ensembl:ENSG00000183161; HPRD:04589; MIM:613897; Vega:OTTHUMG00000166070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FAF
    Summary
    The Fanconi anemia complementation group (FANC) currently includes FANCA, FANCB, FANCC, FANCD1 (also called BRCA2), FANCD2, FANCE, FANCF, FANCG, FANCI, FANCJ (also called BRIP1), FANCL, FANCM and FANCN (also called PALB2). The previously defined group FANCH is the same as FANCA. Fanconi anemia is a genetically heterogeneous recessive disorder characterized by cytogenetic instability, hypersensitivity to DNA crosslinking agents, increased chromosomal breakage, and defective DNA repair. The members of the Fanconi anemia complementation group do not share sequence similarity; they are related by their assembly into a common nuclear protein complex. This gene encodes the protein for complementation group F. [provided by RefSeq, Jul 2008]
    Location :
    11p15
    Sequence :
    Chromosome: 11; NC_000011.9 (22644079..22647387, complement)
    See FANCF in Epigenomics

    Chromosome 11 - NC_000011.9Genomic Context describing neighboring genes Neighboring gene anoctamin 5 Neighboring gene solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6 Neighboring gene growth arrest-specific 2 Neighboring gene small VCP/p97-interacting protein

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Fanconi anemia, complementation group F

    Summary from GeneReviews: Fanconi Anemia Go to GeneReviews

    Disease Characteristics
    Fanconi anemia (FA) is characterized by physical abnormalities, bone marrow failure, and increased risk of malignancy. Physical abnormalities, present in 60%-75% of affected individuals, include one or more of the following: short stature; abnormal skin pigmentation; malformations of the thumbs, forearms, skeletal system, eyes, kidneys and urinary tract, ears (and decreased hearing), heart, gastrointestinal system, central nervous system; hypogonadism; and developmental delay. Progressive bone marrow failure with pancytopenia typically presents in the first decade, often initially with thrombocytopenia or leukopenia. By age 40 to 50 years, the estimated cumulative incidence of bone marrow failure is 90%; the incidence of hematologic malignancies (primarily acute myeloid leukemia) 10%-30%; and of nonhematologic malignancies (solid tumors, particularly of the head and neck, skin, GI tract, and genital tract) 25%-30%.
    Diagnosis Testing
    The diagnosis of FA rests upon the detection of chromosomal aberrations (breaks, rearrangements, radials, exchanges) in cells after culture with a DNA interstrand cross-linking agent such as diepoxybutane (DEB) or mitomycin C (MMC). Molecular genetic testing is complicated by the presence of at least 15 genes, which are responsible for the known FA complementation groups (A, B, C, D1 [BRCA2], D2, E, F, G, I, J [BRIP1], L, M, N [PALB2], O [RAD51C], and P [SLX4]). The latter two genes are still thought of as tentative as they do not fall within a very easily characterized compartment biologically and have very few representative individuals. If the relevant complementation group is identified, molecular genetic testing can be directed to the appropriate gene. Molecular genetic testing is clinically available for all of the genes.
    Genetic Counseling
    Abnormalities of Fanconi anemia (FA) genes are inherited in an autosomal recessive manner except for mutations in FANCB, which are inherited in an X-linked manner. Autosomal recessive FA: Each sibling of an affected individual has a 25% chance of inheriting both mutations and being affected, a 50% chance of inheriting one mutated gene and being a carrier, and a 25% chance of inheriting both normal genes and not being a carrier. Carriers (heterozygotes) for autosomal recessive FA are asymptomatic. X-linked FA: For carrier females the chance of transmitting the mutation in each pregnancy is 50%; males who inherit the mutation will be affected; females who inherit the mutation will be carriers and will usually not be affected. For both autosomal recessive and X-linked FA: Carrier testing for at-risk relatives and prenatal testing for pregnancies at increased risk are possible for all known genes if the disease-causing mutations in the family are known.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    Q9NPI8 O15360 FANCA    HPRD  PubMed  
    Q9NPI8 Q00597 FANCC    HPRD  PubMed  
    Q9NPI8 O15287 FANCG    HPRD  PubMed  
    Q9NPI8 Q14469 HES1    HPRD  PubMed  
    Q9NPI8 P27448 MARK3    HPRD  PubMed  
    Q9NPI8 O95897 OLFM2    HPRD  PubMed  
    BioGRID:108483 BioGRID:132044 APITD1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:108483 BioGRID:128288 C1orf86    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108483 BioGRID:108472 FANCA    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Two-hybrid 
    BioGRID:108483 BioGRID:108473 FANCC    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108483 BioGRID:108475 FANCE    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:108483 BioGRID:108484 FANCG    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:108483 BioGRID:120429 FANCL    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108483 BioGRID:121722 FANCM    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex 
    BioGRID:108483 BioGRID:119664 GINS2    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:108483 BioGRID:109514 HES1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Two-hybrid 
    BioGRID:108483 BioGRID:34316 MHF1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:108483 BioGRID:36973 MHF2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108483 BioGRID:123066 RMI1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108483 BioGRID:112587 SPTAN1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108483 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    • BARD1 signaling events, organism-specific biosystem (from Pathway Interaction Database)
      BARD1 signaling events, organism-specific biosystem
      BARD1 signaling events
    • DNA Repair, organism-specific biosystem (from REACTOME)
      DNA Repair, organism-specific biosystemDNA repair is a phenomenal multi-enzyme, multi-pathway system required to ensure the integrity of the cellular genome. These cellular mechanisms that must cope with the plethora of DNA base pair ad...
    • FA core complex, organism-specific biosystem (from KEGG)
      FA core complex, organism-specific biosystemStructural complex; Genetic information processing; Repair system
    • Fanconi Anemia pathway, organism-specific biosystem (from REACTOME)
      Fanconi Anemia pathway, organism-specific biosystemFanconi anemia (FA) is a genetic disease of genome instability characterized by congenital skeletal defects, aplastic anemia, susceptibility to leukemias, and cellular sensitivity to DNA damaging age...
    • Fanconi anemia pathway, organism-specific biosystem (from KEGG)
      Fanconi anemia pathway, organism-specific biosystemThe Fanconi anemia pathway is required for the efficient repair of damaged DNA, especially interstrand cross-links (ICLs). DNA ICL is directly recognized by FANCM and associated proteins, that recrui...
    • Fanconi anemia pathway, conserved biosystem (from KEGG)
      Fanconi anemia pathway, conserved biosystemThe Fanconi anemia pathway is required for the efficient repair of damaged DNA, especially interstrand cross-links (ICLs). DNA ICL is directly recognized by FANCM and associated proteins, that recrui...

    Markers

    Homology

    Clone Names

    • MGC126856

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    DNA repair TAS
    Traceable Author Statement
    more info
     
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    Fanconi anaemia nuclear complex IDA
    Inferred from Direct Assay
    more info
     
    nucleoplasm TAS
    Traceable Author Statement
    more info
     
    Preferred Names
    Fanconi anemia group F protein
    Names
    Fanconi anemia group F protein

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_007425.1 RefSeqGene

      Range
      5001..8309
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_022725.3NP_073562.1  Fanconi anemia group F protein

      Status: REVIEWED

      Source sequence(s)
      AC103801
      Consensus CDS
      CCDS7857.1
      UniProtKB/TrEMBL
      A3KME0
      UniProtKB/Swiss-Prot
      Q9NPI8
      Related
      ENSP00000330875, OTTHUMP00000231845, ENST00000327470, OTTHUMT00000387712
      Conserved Domains (1) summary
      pfam11107
      Location:1355
      Blast Score: 1125
      FANCF; Fanconi anemia group F protein (FANCF)

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000011.9 Reference GRCh37.p10 Primary Assembly

      Range
      22644079..22647387, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000143.1 Alternate HuRef

      Range
      22327266..22330575, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018922.1 Alternate CHM1_1.0

      Range
      22568640..22571949, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)