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    FANCD2 Fanconi anemia, complementation group D2 [ Homo sapiens ]

    Gene ID: 2177, updated on 11-May-2012

    Summary

    Official Symbol
    FANCD2provided by HGNC
    Official Full Name
    Fanconi anemia, complementation group D2provided by HGNC
    Primary source
    HGNC:3585
    See related
    Ensembl:ENSG00000144554; HPRD:01968; MIM:613984; Vega:OTTHUMG00000128670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FA4; FAD; FACD; FAD2; FA-D2; FANCD; FLJ23826; DKFZp762A223
    Summary
    The Fanconi anemia complementation group (FANC) currently includes FANCA, FANCB, FANCC, FANCD1 (also called BRCA2), FANCD2, FANCE, FANCF, FANCG, FANCI, FANCJ (also called BRIP1), FANCL, FANCM and FANCN (also called PALB2). The previously defined group FANCH is the same as FANCA. Fanconi anemia is a genetically heterogeneous recessive disorder characterized by cytogenetic instability, hypersensitivity to DNA crosslinking agents, increased chromosomal breakage, and defective DNA repair. The members of the Fanconi anemia complementation group do not share sequence similarity; they are related by their assembly into a common nuclear protein complex. This gene encodes the protein for complementation group D2. This protein is monoubiquinated in response to DNA damage, resulting in its localization to nuclear foci with other proteins (BRCA1 AND BRCA2) involved in homology-directed DNA repair. Alternative splicing results in two transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]

    Genomic context

    Location :
    3p26
    Sequence :
    Chromosome: 3; NC_000003.11 (10068113..10143614)
    See FANCD2 in Epigenomics, MapViewer

    Chromosome 3 - NC_000003.11Genomic Context describing neighboring genes Neighboring gene MAP/microtubule affinity-regulating kinase 2 pseudogene 2 Neighboring gene cell death-inducing DFFA-like effector c pseudogene Neighboring gene cytochrome c, somatic pseudogene 11 Neighboring gene chromosome 3 open reading frame 24 Neighboring gene BRICK1, SCAR/WAVE actin-nucleating complex subunit Neighboring gene von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Phenotypes

    Fanconi anemia

    Summary from GeneReviews: Go to GeneReviews

    Disease Characteristics
    Fanconi anemia (FA) is characterized by physical abnormalities, bone marrow failure, and increased risk of malignancy. Physical abnormalities, present in 60%-75% of affected individuals, include one or more of the following: short stature; abnormal skin pigmentation; malformations of the thumbs, forearms, skeletal system, eyes, kidneys and urinary tract, ears (and decreased hearing), heart, gastrointestinal system, central nervous system; hypogonadism; and developmental delay. Progressive bone marrow failure with pancytopenia typically presents in the first decade, often initially with thrombocytopenia or leukopenia. By age 40 to 50 years, the estimated cumulative incidence of bone marrow failure is 90%; the incidence of hematologic malignancies (primarily acute myeloid leukemia) 10%-30%; and of nonhematologic malignancies (solid tumors, particularly of the head and neck, skin, GI tract, and genital tract) 25%-30%.
    Diagnosis Testing
    The diagnosis of FA rests upon the detection of chromosomal aberrations (breaks, rearrangements, radials, exchanges) in cells after culture with a DNA interstrand cross-linking agent such as diepoxybutane (DEB) or mitomycin C (MMC). Molecular genetic testing is complicated by the presence of at least 15 genes, which are responsible for the known FA complementation groups (A, B, C, D1 [BRCA2], D2, E, F, G, I, J [BRIP1], L, M, N [PALB2], O [RAD51C], and P [SLX4]). The latter two genes are still thought of as tentative as they do not fall within a very easily characterized compartment biologically and have very few representative individuals. If the relevant complementation group is identified, molecular genetic testing can be directed to the appropriate gene. Molecular genetic testing is clinically available for most of the genes.
    Genetic Counseling
    Abnormalities of Fanconi anemia (FA) genes are inherited in an autosomal recessive manner except for mutations in FANCB, which are inherited in an X-linked manner. Autosomal recessive FA: Each sibling of an affected individual has a 25% chance of inheriting both mutations and being affected, a 50% chance of inheriting one mutated gene and being a carrier, and a 25% chance of inheriting both normal genes and not being a carrier. Carriers (heterozygotes) for autosomal recessive FA are asymptomatic. X-linked FA: For carrier females the chance of transmitting the mutation in each pregnancy is 50%; males who inherit the mutation will be affected; females who inherit the mutation will be carriers and will usually not be affected. For both autosomal recessive and X-linked FA: Carrier testing for at-risk relatives and prenatal testing for pregnancies at increased risk are possible for all known genes if the disease-causing mutations in the family are known.
    References

    Fanconi anemia, complementation group D2

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    NP_149075.2 NP_000050.1 BRCA2    BIND  PubMed FANCD2 interacts with BRCA2. 
    NP_149075.2 NP_003359.3 USP1    BIND  PubMed USP1 interacts with FANCD2. 
    Q9BXW9 Q13315 ATM    HPRD  PubMed  
    Q9BXW9 P54132 BLM    HPRD  PubMed  
    Q9BXW9 P38398 BRCA1    HPRD  PubMed  
    Q9BXW9 P51587 BRCA2    HPRD  PubMed  
    Q9BXW9 Q00597 FANCC    HPRD  PubMed  
    Q9BXW9 Q9HB96 FANCE    HPRD  PubMed  
    Q9BXW9 Q9NVI1 FANCI    HPRD  PubMed  
    Q9BXW9 O00255 MEN1    HPRD  PubMed  
    Q9BXW9 P49959 MRE11A    HPRD  PubMed  
    Q9BXW9 O60934 NBN    HPRD  PubMed  
    Q9BXW9 Q06609 RAD51    HPRD  PubMed  
    Q9BXW9 P19438 TNFRSF1A    HPRD  PubMed  
    Q9BXW9 P20333 TNFRSF1B    HPRD  PubMed  
    Q9BXW9 Ubiquitin B UBB    HPRD  PubMed  
    Q9BXW9 O94782 USP1    HPRD  PubMed  
    BioGRID:108474 BioGRID:106962 ATM    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity; Reconstituted Complex; Two-hybrid 
    BioGRID:108474 BioGRID:107027 ATR    BioGRID  PubMed Biochemical Activity 
    BioGRID:108474 BioGRID:107110 BLM    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108474 BioGRID:107140 BRCA1    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity; Two-hybrid 
    BioGRID:108474 BioGRID:107142 BRCA2    BioGRID  PubMed Affinity Capture-Western; Co-localization; Two-hybrid 
    BioGRID:108474 BioGRID:107481 CEBPD    BioGRID  PubMed Affinity Capture-Luminescence; Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:108474 BioGRID:122331 DCLRE1B    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108474 BioGRID:116573 FAN1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Co-fractionation; Co-localization 
    BioGRID:108474 BioGRID:108473 FANCC    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108474 BioGRID:108475 FANCE    BioGRID  PubMed Affinity Capture-Western; Co-purification; Two-hybrid 
    BioGRID:108474 BioGRID:108484 FANCG    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108474 BioGRID:120511 FANCI    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:108474 BioGRID:108598 FOXO3    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108474 BioGRID:109268 H2AFX    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108474 BioGRID:122828 IPO4    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108474 BioGRID:115779 KAT5    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:108474 BioGRID:110384 MEN1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:108474 BioGRID:110694 MYC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:108474 BioGRID:110763 NBN    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108474 BioGRID:111142 PCNA    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:108474 BioGRID:131695 POLN    BioGRID  PubMed Affinity Capture-Western; Co-localization 
    BioGRID:108474 BioGRID:121212 RAD18    BioGRID  PubMed Affinity Capture-Western; Co-localization 
    BioGRID:108474 BioGRID:112497 SUMO2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:108474 BioGRID:112872 TERF1    BioGRID  PubMed Biochemical Activity; Co-localization 
    BioGRID:108474 BioGRID:112986 TNFRSF1A    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:108474 BioGRID:112987 TNFRSF1B    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:108474 BioGRID:114207 TNKS    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity; Reconstituted Complex 
    BioGRID:108474 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:108474 BioGRID:113241 USP1    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity 
    BioGRID:108474 BioGRID:121649 WDR48    BioGRID  PubMed Biochemical Activity 

    General gene information

    Markers

    Homology

    • Homologs of the FANCD2 gene: The FANCD2 gene is conserved in chimpanzee, , dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, A.thaliana, and rice.
    • Map Viewer (Mouse, Rat)

    Pathways from BioSystems

    • BARD1 signaling events, organism-specific biosystem (from Pathway Interaction Database)
      BARD1 signaling events, organism-specific biosystem
      BARD1 signaling events
    • DNA Repair, organism-specific biosystem (from REACTOME)
      DNA Repair, organism-specific biosystemDNA repair is a phenomenal multi-enzyme, multi-pathway system required to ensure the integrity of the cellular genome. These cellular mechanisms that must cope with the plethora of DNA base pair ad...
    • Fanconi Anemia pathway, organism-specific biosystem (from REACTOME)
      Fanconi Anemia pathway, organism-specific biosystemFanconi anemia (FA) is a genetic disease of genome instability characterized by congenital skeletal defects, aplastic anemia, susceptibility to leukemias, and cellular sensitivity to DNA damaging age...
    • Fanconi anemia pathway, organism-specific biosystem (from KEGG)
      Fanconi anemia pathway, organism-specific biosystemThe Fanconi anemia pathway is required for the efficient repair of damaged DNA, especially interstrand cross-links (ICLs). DNA ICL is directly recognized by FANCM and associated proteins, that recrui...
    • Fanconi anemia pathway, conserved biosystem (from KEGG)
      Fanconi anemia pathway, conserved biosystemThe Fanconi anemia pathway is required for the efficient repair of damaged DNA, especially interstrand cross-links (ICLs). DNA ICL is directly recognized by FANCM and associated proteins, that recrui...
    • Regulation of the Fanconi anemia pathway, organism-specific biosystem (from REACTOME)
      Regulation of the Fanconi anemia pathway, organism-specific biosystemThe Fanconi anemia DNA repair pathway is negatively regulated by the deubiquitination of FANCD2 an postively regulated by phosphorylation of the FANCD2 and FANCI. The USP1 deubiquitinating enzyme is...
    • TNF-alpha/NF-kB Signaling Pathway, organism-specific biosystem (from WikiPathways)
      TNF-alpha/NF-kB Signaling Pathway, organism-specific biosystem"The Tumor Necrosis Factor alpha is a proinflammatory cytokine belonging to the TNF superfamily. It signals through 2 separate receptors - TNFRSF1A and TNFRSF1B, both members of the TNF receptor supe...

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    DNA repair TAS
    Traceable Author Statement
    more info
     
    cell cycle IEA
    Inferred from Electronic Annotation
    more info
     
    gamete generation IEA
    Inferred from Electronic Annotation
    more info
     
    response to gamma radiation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    synapsis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    condensed chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm TAS
    Traceable Author Statement
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Fanconi anemia group D2 protein
    Names
    Fanconi anemia group D2 protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_007311.1 RefSeqGene

      Range
      5001..80502
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001018115.1NP_001018125.1  Fanconi anemia group D2 protein isoform b

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region, compared to variant 1. It encodes isoform b which has a shorter and distinct C-terminus, compared to isoform a.
      Source sequence(s)
      AF340183, BC038666, BU617044, BX956311
      Consensus CDS
      CCDS33696.1
      UniProtKB/Swiss-Prot
      Q9BXW9
      Related
      ENSP00000373318, ENST00000383807
    2. NM_033084.3NP_149075.2  Fanconi anemia group D2 protein isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
      Source sequence(s)
      AC034193, AF230336, BX956311
      Consensus CDS
      CCDS2595.1
      UniProtKB/Swiss-Prot
      Q9BXW9
      Related
      ENSP00000287647, OTTHUMP00000158853, ENST00000287647, OTTHUMT00000250562

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000003.11 Reference GRCh37.p5 Primary Assembly

      Range
      10068113..10143614
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000135.1 Alternate HuRef

      Range
      10004471..10079989
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AC034193.5 (62184..137685) None
    genomic AF273251.1 AAK18772.1
      AAK18773.1
    genomic CH471055.1 EAW64055.1
      EAW64056.1
      EAW64057.1
      EAW64058.1
    genomic DQ341263.1 ABC67466.1
    mRNA AF230336.1 AAL05980.1
    mRNA AF340183.1 AAK15369.1
    mRNA AK022613.1 BAB14132.1
    mRNA AK074406.1 None
    mRNA AK307512.1 None
    mRNA AL832427.1 CAH10647.1
    mRNA BC013582.2 AAH13582.1
    mRNA BC038666.1 None
    mRNA BU617044.1 None
    mRNA BX956311.1 None
    other-genetic BC156799.1 AAI56800.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9BXW9.1 GenPept UniProtKB/Swiss-Prot:Q9BXW9

      Supplemental Content

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