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    FANCC Fanconi anemia, complementation group C [ Homo sapiens (human) ]

    Gene ID: 2176, updated on 22-May-2013
    Official Symbol
    FANCCprovided by HGNC
    Official Full Name
    Fanconi anemia, complementation group Cprovided by HGNC
    Primary source
    HGNC:3584
    Locus tag
    RP11-80I15.2
    See related
    Ensembl:ENSG00000158169; HPRD:01967; MIM:613899; Vega:OTTHUMG00000020279
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FA3; FAC; FACC
    Summary
    The Fanconi anemia complementation group (FANC) currently includes FANCA, FANCB, FANCC, FANCD1 (also called BRCA2), FANCD2, FANCE, FANCF, FANCG, FANCI, FANCJ (also called BRIP1), FANCL, FANCM and FANCN (also called PALB2). The previously defined group FANCH is the same as FANCA. Fanconi anemia is a genetically heterogeneous recessive disorder characterized by cytogenetic instability, hypersensitivity to DNA crosslinking agents, increased chromosomal breakage, and defective DNA repair. The members of the Fanconi anemia complementation group do not share sequence similarity; they are related by their assembly into a common nuclear protein complex. This gene encodes the protein for complementation group C. [provided by RefSeq, Jul 2008]
    Location :
    9q22.3
    Sequence :
    Chromosome: 9; NC_000009.11 (97861336..98079991, complement)
    See FANCC in Epigenomics, MapViewer

    Chromosome 9 - NC_000009.11Genomic Context describing neighboring genes Neighboring gene chromosome 9 open reading frame 3 Neighboring gene microRNA 3074 Neighboring gene microRNA 24-1 Neighboring gene microRNA 27b Neighboring gene ribosomal protein S26 pseudogene 37 Neighboring gene ATM interactor pseudogene Neighboring gene uncharacterized LOC100507346 Neighboring gene metallothionein 1 pseudogene 1 Neighboring gene patched 1

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Fanconi anemia, complementation group C

    Summary from GeneReviews: Fanconi Anemia Go to GeneReviews

    Disease Characteristics
    Fanconi anemia (FA) is characterized by physical abnormalities, bone marrow failure, and increased risk of malignancy. Physical abnormalities, present in 60%-75% of affected individuals, include one or more of the following: short stature; abnormal skin pigmentation; malformations of the thumbs, forearms, skeletal system, eyes, kidneys and urinary tract, ears (and decreased hearing), heart, gastrointestinal system, central nervous system; hypogonadism; and developmental delay. Progressive bone marrow failure with pancytopenia typically presents in the first decade, often initially with thrombocytopenia or leukopenia. By age 40 to 50 years, the estimated cumulative incidence of bone marrow failure is 90%; the incidence of hematologic malignancies (primarily acute myeloid leukemia) 10%-30%; and of nonhematologic malignancies (solid tumors, particularly of the head and neck, skin, GI tract, and genital tract) 25%-30%.
    Diagnosis Testing
    The diagnosis of FA rests upon the detection of chromosomal aberrations (breaks, rearrangements, radials, exchanges) in cells after culture with a DNA interstrand cross-linking agent such as diepoxybutane (DEB) or mitomycin C (MMC). Molecular genetic testing is complicated by the presence of at least 15 genes, which are responsible for the known FA complementation groups (A, B, C, D1 [BRCA2], D2, E, F, G, I, J [BRIP1], L, M, N [PALB2], O [RAD51C], and P [SLX4]). The latter two genes are still thought of as tentative as they do not fall within a very easily characterized compartment biologically and have very few representative individuals. If the relevant complementation group is identified, molecular genetic testing can be directed to the appropriate gene. Molecular genetic testing is clinically available for all of the genes.
    Genetic Counseling
    Abnormalities of Fanconi anemia (FA) genes are inherited in an autosomal recessive manner except for mutations in FANCB, which are inherited in an X-linked manner. Autosomal recessive FA: Each sibling of an affected individual has a 25% chance of inheriting both mutations and being affected, a 50% chance of inheriting one mutated gene and being a carrier, and a 25% chance of inheriting both normal genes and not being a carrier. Carriers (heterozygotes) for autosomal recessive FA are asymptomatic. X-linked FA: For carrier females the chance of transmitting the mutation in each pregnancy is 50%; males who inherit the mutation will be affected; females who inherit the mutation will be carriers and will usually not be affected. For both autosomal recessive and X-linked FA: Carrier testing for at-risk relatives and prenatal testing for pregnancies at increased risk are possible for all known genes if the disease-causing mutations in the family are known.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    Q00597 P06493 CDK1    HPRD  PubMed  
    Q00597 P25685 DNAJB1    HPRD  PubMed  
    Q00597 O15360 FANCA    HPRD  PubMed  
    Q00597 Q9BXW9 FANCD2    HPRD  PubMed  
    Q00597 Q9HB96 FANCE    HPRD  PubMed  
    Q00597 Q9NPI8 FANCF    HPRD  PubMed  
    Q00597 O15287 FANCG    HPRD  PubMed  
    Q00597 P09211 GSTP1    HPRD  PubMed  
    Q00597 P14625 HSP90B1    HPRD  PubMed  
    Q00597 Heat shock 70 KD protein 1A HSPA1A    HPRD  PubMed  
    Q00597 P02549 SPTA1    HPRD  PubMed  
    Q00597 Q13813 SPTAN1    HPRD  PubMed  
    Q00597 P42224 STAT1    HPRD  PubMed  
    Q00597 Q9Y2Y4 ZBTB32    HPRD  PubMed  
    BioGRID:108473 BioGRID:110612 ATP6    BioGRID  PubMed Two-hybrid 
    BioGRID:108473 BioGRID:119621 AZIN1    BioGRID  PubMed Two-hybrid 
    BioGRID:108473 BioGRID:128288 C1orf86    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108473 BioGRID:107273 CAPN1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108473 BioGRID:116305 CAPN10    BioGRID  PubMed Two-hybrid 
    BioGRID:108473 BioGRID:107420 CDK1    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:108473 BioGRID:107880 CTNNB1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108473 BioGRID:109569 DNAJB1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:108473 BioGRID:120408 EBLN2    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:108473 BioGRID:111596 EIF2AK2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108473 BioGRID:108472 FANCA    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:108473 BioGRID:108474 FANCD2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108473 BioGRID:108475 FANCE    BioGRID  PubMed Affinity Capture-Western; Co-localization; Reconstituted Complex; Two-hybrid 
    BioGRID:108473 BioGRID:108483 FANCF    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108473 BioGRID:108484 FANCG    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108473 BioGRID:120429 FANCL    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108473 BioGRID:121722 FANCM    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:108473 BioGRID:109205 GSTP1    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:108473 BioGRID:109514 HES1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108473 BioGRID:109552 HSP90AA1    BioGRID  PubMed Two-hybrid 
    BioGRID:108473 BioGRID:113036 HSP90B1    BioGRID  PubMed Affinity Capture-Western; Co-purification; Two-hybrid 
    BioGRID:108473 BioGRID:109535 HSPA1A    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    BioGRID:108473 BioGRID:109540 HSPA4    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:108473 BioGRID:109544 HSPA8    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:108473 BioGRID:109766 IK    BioGRID  PubMed Two-hybrid 
    BioGRID:108473 BioGRID:110046 KRT1    BioGRID  PubMed Two-hybrid 
    BioGRID:108473 BioGRID:34316 MHF1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:108473 BioGRID:110929 NPM1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108473 BioGRID:111443 POR    BioGRID  PubMed Affinity Capture-Western; Co-purification; Two-hybrid 
    BioGRID:108473 BioGRID:112061 RPL18    BioGRID  PubMed Two-hybrid 
    BioGRID:108473 BioGRID:112103 RPS3A    BioGRID  PubMed Two-hybrid 
    BioGRID:108473 BioGRID:112587 SPTAN1    BioGRID  PubMed Affinity Capture-Western; Co-purification 
    BioGRID:108473 BioGRID:112649 STAT1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:108473 BioGRID:116120 TCERG1    BioGRID  PubMed Two-hybrid 
    BioGRID:108473 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:108473 BioGRID:114551 USP14    BioGRID  PubMed Two-hybrid 
    BioGRID:108473 BioGRID:117964 ZBTB32    BioGRID  PubMed Affinity Capture-Western; Two-hybrid 
    • BARD1 signaling events, organism-specific biosystem (from Pathway Interaction Database)
      BARD1 signaling events, organism-specific biosystem
      BARD1 signaling events
    • DNA Repair, organism-specific biosystem (from REACTOME)
      DNA Repair, organism-specific biosystemDNA repair is a phenomenal multi-enzyme, multi-pathway system required to ensure the integrity of the cellular genome. These cellular mechanisms that must cope with the plethora of DNA base pair ad...
    • FA core complex, organism-specific biosystem (from KEGG)
      FA core complex, organism-specific biosystemStructural complex; Genetic information processing; Repair system
    • Fanconi Anemia pathway, organism-specific biosystem (from REACTOME)
      Fanconi Anemia pathway, organism-specific biosystemFanconi anemia (FA) is a genetic disease of genome instability characterized by congenital skeletal defects, aplastic anemia, susceptibility to leukemias, and cellular sensitivity to DNA damaging age...
    • Fanconi anemia pathway, organism-specific biosystem (from KEGG)
      Fanconi anemia pathway, organism-specific biosystemThe Fanconi anemia pathway is required for the efficient repair of damaged DNA, especially interstrand cross-links (ICLs). DNA ICL is directly recognized by FANCM and associated proteins, that recrui...
    • Fanconi anemia pathway, conserved biosystem (from KEGG)
      Fanconi anemia pathway, conserved biosystemThe Fanconi anemia pathway is required for the efficient repair of damaged DNA, especially interstrand cross-links (ICLs). DNA ICL is directly recognized by FANCM and associated proteins, that recrui...

    Markers

    Homology

    Clone Names

    • FLJ14675

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    DNA repair TAS
    Traceable Author Statement
    more info
     
    germ cell development IEA
    Inferred from Electronic Annotation
    more info
     
    myeloid cell homeostasis IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
     
    protein complex assembly TAS
    Traceable Author Statement
    more info
    PubMed 
    removal of superoxide radicals IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Fanconi anaemia nuclear complex IDA
    Inferred from Direct Assay
    more info
     
    cytoplasm TAS
    Traceable Author Statement
    more info
    PubMed 
    cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleoplasm TAS
    Traceable Author Statement
    more info
     
    nucleus TAS
    Traceable Author Statement
    more info
    PubMed 
    Preferred Names
    Fanconi anemia group C protein
    Names
    Fanconi anemia group C protein

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_011707.1 RefSeqGene

      Range
      5001..223656
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_000136.2NP_000127.2  Fanconi anemia group C protein isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a).
      Source sequence(s)
      AU132608, BC015748, CB052780
      Consensus CDS
      CCDS35071.1
      UniProtKB/Swiss-Prot
      Q00597
      Related
      ENSP00000289081, OTTHUMP00000021706, ENST00000289081, OTTHUMT00000053219
      Conserved Domains (1) summary
      pfam02106
      Location:1543
      Blast Score: 2445
      Fanconi_C; Fanconi anaemia group C protein
    2. NM_001243743.1NP_001230672.1  Fanconi anemia group C protein isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same isoform (a).
      Source sequence(s)
      AL354893, BC015748, DB445119, X66894
      Consensus CDS
      CCDS35071.1
      UniProtKB/Swiss-Prot
      Q00597
      Related
      ENSP00000364454, OTTHUMP00000021707, ENST00000375305, OTTHUMT00000053220
      Conserved Domains (1) summary
      pfam02106
      Location:1543
      Blast Score: 2445
      Fanconi_C; Fanconi anaemia group C protein
    3. NM_001243744.1NP_001230673.1  Fanconi anemia group C protein isoform b

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) differs in the 3' coding region and 3' UTR, compared to variant 1. The resulting isoform (b) has a distinct C-terminus and is shorter than isoform a.
      Source sequence(s)
      AI280997, AK222871, AK304887, AL354893
      UniProtKB/TrEMBL
      B4E3W2
      Conserved Domains (1) summary
      pfam02106
      Location:1443
      Blast Score: 2125
      Fanconi_C; Fanconi anaemia group C protein

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000009.11 Reference GRCh37.p10 Primary Assembly

      Range
      97861336..98079991, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000141.1 Alternate HuRef

      Range
      67470857..67689280, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018920.1 Alternate CHM1_1.0

      Range
      97877618..98096247, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

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