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Tef thyrotroph embryonic factor [ Mus musculus (house mouse) ]

Gene ID: 21685, updated on 21-May-2016
Official Symbol
Tefprovided by MGI
Official Full Name
thyrotroph embryonic factorprovided by MGI
Primary source
MGI:MGI:98663
See related
Ensembl:ENSMUSG00000022389 Vega:OTTMUSG00000035246
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2310028D20Rik
Orthologs
Location:
15 E1; 15 38.25 cM
Exon count:
8
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 15 NC_000081.6 (81802673..81826863)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (81633103..81657293)

Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH type containing 7B Neighboring gene predicted gene, 17597 Neighboring gene predicted gene, 38461 Neighboring gene predicted gene 8444 Neighboring gene transducer of ERBB2, 2

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
multicellular organism development IBA
Inferred from Biological aspect of Ancestor
more info
 
positive regulation of transcription from RNA polymerase II promoter IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
 
regulation of transcription from RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
rhythmic process IEA
Inferred from Electronic Annotation
more info
 
transcription from RNA polymerase II promoter ISO
Inferred from Sequence Orthology
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
thyrotroph embryonic factor
Names
thyrotrophic embryonic factor

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_017376.3NP_059072.1  thyrotroph embryonic factor isoform 1

    See identical proteins and their annotated locations for NP_059072.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK147965, AY540631, BP764162, BY336350
    Consensus CDS
    CCDS27672.1
    UniProtKB/Swiss-Prot
    Q9JLC6
    Related
    ENSMUSP00000023024, OTTMUSP00000049165, ENSMUST00000023024, OTTMUST00000089881
    Conserved Domains (1) summary
    cd14695
    Location:230288
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain
  2. NM_153484.3NP_705617.2  thyrotroph embryonic factor isoform 2

    See identical proteins and their annotated locations for NP_705617.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents use of an alternate promoter and 5' coding exon, compared to variant 1. The resulting isoform (2) has a shorter and distinct N-terminus, compared to isoform 1.
    Source sequence(s)
    AK141606, AK147965, BP764162, BY296040
    Consensus CDS
    CCDS27671.2
    UniProtKB/Swiss-Prot
    Q9JLC6
    Related
    ENSMUSP00000105180, OTTMUSP00000049164, ENSMUST00000109553, OTTMUST00000089876
    Conserved Domains (1) summary
    cd14695
    Location:214272
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000081.6 Reference GRCm38.p3 C57BL/6J

    Range
    81802673..81826863
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011245558.1XP_011243860.1  

    See identical proteins and their annotated locations for XP_011243860.1

    Conserved Domains (1) summary
    cd14695
    Location:253311
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain
  2. XM_006520744.1XP_006520807.1  

    Conserved Domains (1) summary
    cd14695
    Location:161219
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain
  3. XM_011245560.1XP_011243862.1  

    See identical proteins and their annotated locations for XP_011243862.1

    Conserved Domains (1) summary
    cd14695
    Location:200258
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain
  4. XM_011245557.1XP_011243859.1  

    Conserved Domains (1) summary
    cd14695
    Location:269327
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain
  5. XM_011245559.1XP_011243861.1  

    See identical proteins and their annotated locations for XP_011243861.1

    Conserved Domains (1) summary
    cd14695
    Location:200258
    bZIP_HLF; Basic leucine zipper (bZIP) domain of Hepatic leukemia factor (HLF) and similar proteins: a DNA-binding and dimerization domain

Alternate Mm_Celera

Genomic

  1. AC_000037.1 Alternate Mm_Celera

    Range
    83921481..83945730
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)