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    F10 coagulation factor X [ Homo sapiens ]

    Gene ID: 2159, updated on 20-May-2012

    Summary

    Official Symbol
    F10provided by HGNC
    Official Full Name
    coagulation factor Xprovided by HGNC
    Primary source
    HGNC:3528
    Locus tag
    RP11-98F14.9
    See related
    Ensembl:ENSG00000126218; HPRD:01966; MIM:613872; Vega:OTTHUMG00000017374
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FX; FXA
    Summary
    This gene encodes the vitamin K-dependent coagulation factor X of the blood coagulation cascade. This factor undergoes multiple processing steps before its preproprotein is converted to a mature two-chain form by the excision of the tripeptide RKR. Two chains of the factor are held together by 1 or more disulfide bonds; the light chain contains 2 EGF-like domains, while the heavy chain contains the catalytic domain which is structurally homologous to those of the other hemostatic serine proteases. The mature factor is activated by the cleavage of the activation peptide by factor IXa (in the intrisic pathway), or by factor VIIa (in the extrinsic pathway). The activated factor then converts prothrombin to thrombin in the presence of factor Va, Ca+2, and phospholipid during blood clotting. Mutations of this gene result in factor X deficiency, a hemorrhagic condition of variable severity. [provided by RefSeq, Jul 2008]

    Genomic context

    Location :
    13q34
    Sequence :
    Chromosome: 13; NC_000013.10 (113777113..113803843)

    Chromosome 13 - NC_000013.10Genomic Context describing neighboring genes Neighboring gene MCF.2 cell line derived transforming sequence-like Neighboring gene coagulation factor VII (serum prothrombin conversion accelerator) Neighboring gene lysyl-tRNA synthetase pseudogene 2 Neighboring gene protein Z, vitamin K-dependent plasma glycoprotein Neighboring gene PCI domain containing 2

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    P00742 P02749 APOH    HPRD  PubMed  
    P00742 P00742 F10    HPRD  PubMed  
    P00742 P13726 F3    HPRD  PubMed  
    P00742 P12259 F5    HPRD  PubMed  
    P00742 P08709 F7    HPRD  PubMed  
    P00742 P00451 F8    HPRD  PubMed  
    P00742 Q05329 GAD2    HPRD  PubMed  
    P00742 P38435 GGCX    HPRD  PubMed  
    P00742 P16403 HIST1H1C    HPRD  PubMed  
    P00742 O14880 MGST3    HPRD  PubMed  
    P00742 P00750 PLAT    HPRD  PubMed  
    P00742 P00747 PLG    HPRD  PubMed  
    P00742 Q9Y478 PRKAB1    HPRD  PubMed  
    P00742 P07225 PROS1    HPRD  PubMed  
    P00742 Q9UK55 SERPINA10    HPRD  PubMed  
    P00742 P05154 SERPINA5    HPRD  PubMed  
    P00742 P35237 SERPINB6    HPRD  PubMed  
    P00742 P50452 SERPINB8    HPRD  PubMed  
    P00742 P10646 TFPI    HPRD  PubMed  
    P00742 Effector cell protease receptor 1     HPRD  PubMed  
    BioGRID:108457 BioGRID:108452 F5    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108457 BioGRID:108453 F7    BioGRID  PubMed Biochemical Activity 
    BioGRID:108457 BioGRID:108455 F8    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108457 BioGRID:111343 PLAT    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108457 BioGRID:111356 PLG    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108457 BioGRID:111551 PRKAB1    BioGRID  PubMed Two-hybrid 
    BioGRID:108457 BioGRID:111289 SERPINB8    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108457 BioGRID:112893 TFPI    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:108457 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 

    General gene information

    Markers

    Homology

    Pathways from BioSystems

    • Blood Clotting Cascade, organism-specific biosystem (from WikiPathways)
      Blood Clotting Cascade, organism-specific biosystemCoagulation is a complex process by which blood forms clots. It is an important part of hemostasis (the cessation of blood loss from a damaged vessel), wherein a damaged blood vessel wall is covered ...
    • Common Pathway, organism-specific biosystem (from REACTOME)
      Common Pathway, organism-specific biosystemThe common pathway consists of the cascade of activation events leading from the formation of activated factor X to the formation of active thrombin, the cleavage of fibrinogen by thrombin, and the f...
    • Complement and Coagulation Cascades, organism-specific biosystem (from WikiPathways)
      Complement and Coagulation Cascades, organism-specific biosystemBlood coagulation is a series of coordinated and calcium-dependent proenzyme-to-serine protease conversions likely to be localized on the surfaces of activated cells in vivo. It culminates in the for...
    • Complement and coagulation cascades, organism-specific biosystem (from KEGG)
      Complement and coagulation cascades, organism-specific biosystemThe complement system is a proteolytic cascade in blood plasma and a mediator of innate immunity, a nonspecific defense mechanism against pathogens. There are three pathways of complement activation:...
    • Complement and coagulation cascades, conserved biosystem (from KEGG)
      Complement and coagulation cascades, conserved biosystemThe complement system is a proteolytic cascade in blood plasma and a mediator of innate immunity, a nonspecific defense mechanism against pathogens. There are three pathways of complement activation:...
    • Extrinsic Pathway, organism-specific biosystem (from REACTOME)
      Extrinsic Pathway, organism-specific biosystemFactor VII, the protease that initiates the normal blood clotting cascade, circulates in the blood in both its proenzyme (factor VII) and its activated (factor VIIa) forms. No clotting occurs, howev...
    • Formation of Fibrin Clot (Clotting Cascade), organism-specific biosystem (from REACTOME)
      Formation of Fibrin Clot (Clotting Cascade), organism-specific biosystemThe formation of a fibrin clot at the site of an injury to the wall of a normal blood vessel is an essential part of the process to stop blood loss after vascular injury. The reactions that lead to ...
    • Gamma-carboxylation of protein precursors, organism-specific biosystem (from REACTOME)
      Gamma-carboxylation of protein precursors, organism-specific biosystemGamma-carboxylation of a cluster of glutamate residues near the amino termini of thrombin, factor VII, factor IX, factor X, protein C, protein S, protein Z, and Gas 6 is required for these proteins t...
    • Gamma-carboxylation, transport, and amino-terminal cleavage of proteins, organism-specific biosystem (from REACTOME)
      Gamma-carboxylation, transport, and amino-terminal cleavage of proteins, organism-specific biosystemA number of proteins, including eight required for normal blood clot formation and its regulation (Prothrombin (factor II), factor VII, factor IX, factor X, protein C, protein S, protein Z, and Gas6)...
    • Hemostasis, organism-specific biosystem (from REACTOME)
      Hemostasis, organism-specific biosystemHemostasis is a physiological response that culminates in the arrest of bleeding from an injured vessel. Under normal conditions the vascular endothelium supports vasodilation, inhibits platelet adhe...
    • Intrinsic Pathway, organism-specific biosystem (from REACTOME)
      Intrinsic Pathway, organism-specific biosystemThe intrinsic pathway of blood clotting connects interactions among kininogen (high molecular weight kininogen, HK), prekallikrein (PK), and factor XII to the activation of clotting factor X by a ser...
    • Metabolism of proteins, organism-specific biosystem (from REACTOME)
      Metabolism of proteins, organism-specific biosystemProtein metabolism comprises the pathways of translation, post-translational modification and protein folding.
    • PTM: gamma carboxylation, hypusine formation and arylsulfatase activation, organism-specific biosystem (from REACTOME)
      PTM: gamma carboxylation, hypusine formation and arylsulfatase activation, organism-specific biosystemAfter translation, many newly formed proteins undergo further covalent modifications that alter their functional properties and that are essentially irreversible under physiological conditions in the...
    • Post-translational protein modification, organism-specific biosystem (from REACTOME)
      Post-translational protein modification, organism-specific biosystemAfter translation, many newly formed proteins undergo further covalent modifications that alter their functional properties and that are essentially irreversible under physiological conditions in the...
    • Removal of aminoterminal propeptides from gamma-carboxylated proteins, organism-specific biosystem (from REACTOME)
      Removal of aminoterminal propeptides from gamma-carboxylated proteins, organism-specific biosystemFurin is an endopeptidase localized to the Golgi membrane that cleaves many proteins on the carboxyterminal side of the sequence motif Arg-[any residue]-(Lys or Arg)-Arg (Jones et al. 1995; Leduc et ...
    • Transport of gamma-carboxylated protein precursors from the endoplasmic reticulum to the Golgi apparatus, organism-specific biosystem (from REACTOME)
      Transport of gamma-carboxylated protein precursors from the endoplasmic reticulum to the Golgi apparatus, organism-specific biosystemThe details of the vesicle-mediated transport of proteins from the endoplasmic reticulum to the Golgi apparatus will be annotated in a future release of Reactome.

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    peptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    phospholipid binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    serine-type endopeptidase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    serine-type endopeptidase activity TAS
    Traceable Author Statement
    more info
     
    Process Evidence Code Pubs
    blood coagulation IC
    Inferred by Curator
    more info
    PubMed 
    blood coagulation TAS
    Traceable Author Statement
    more info
     
    blood coagulation, extrinsic pathway TAS
    Traceable Author Statement
    more info
     
    blood coagulation, intrinsic pathway TAS
    Traceable Author Statement
    more info
     
    cellular protein metabolic process TAS
    Traceable Author Statement
    more info
     
    peptidyl-glutamic acid carboxylation TAS
    Traceable Author Statement
    more info
     
    positive regulation of cell migration TAS
    Traceable Author Statement
    more info
    PubMed 
    positive regulation of protein kinase B signaling cascade IDA
    Inferred from Direct Assay
    more info
    PubMed 
    post-translational protein modification TAS
    Traceable Author Statement
    more info
     
    proteolysis TAS
    Traceable Author Statement
    more info
     
    Component Evidence Code Pubs
    Golgi lumen TAS
    Traceable Author Statement
    more info
     
    endoplasmic reticulum lumen TAS
    Traceable Author Statement
    more info
     
    extracellular region NAS
    Non-traceable Author Statement
    more info
    PubMed 
    extracellular region TAS
    Traceable Author Statement
    more info
     
    intrinsic to external side of plasma membrane IC
    Inferred by Curator
    more info
    PubMed 
    membrane fraction IEA
    Inferred from Electronic Annotation
    more info
     
    microsome IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane TAS
    Traceable Author Statement
    more info
     

    General protein information

    Preferred Names
    coagulation factor X
    Names
    coagulation factor X
    factor Xa
    prothrombinase
    Stuart-Prower factor
    NP_000495.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009258.1 RefSeqGene

      Range
      5001..31731
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_000504.3NP_000495.1  coagulation factor X preproprotein

      Status: REVIEWED

      Source sequence(s)
      AL137002, BC046125, CB158437
      Consensus CDS
      CCDS9530.1
      UniProtKB/Swiss-Prot
      P00742
      UniProtKB/TrEMBL
      Q5JVE7
      Related
      ENSP00000364709, OTTHUMP00000018735, ENST00000375559, OTTHUMT00000045841
      Conserved Domains (4) summary
      cd00054
      Location:86122
      Blast Score: 115
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00190
      Location:235464
      Blast Score: 631
      Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
      cl02449
      Location:2585
      Blast Score: 252
      Gla; Vitamin K-dependent carboxylation/gamma-carboxyglutamic (GLA) domain
      cl00057
      Location:114163
      Blast Score: 88
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000013.10 Reference GRCh37.p5 Primary Assembly

      Range
      113777113..113803843
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000145.1 Alternate HuRef

      Range
      94215823..94242228
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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