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    F7 coagulation factor VII (serum prothrombin conversion accelerator) [ Homo sapiens (human) ]

    Gene ID: 2155, updated on 22-May-2013
    Official Symbol
    F7provided by HGNC
    Official Full Name
    coagulation factor VII (serum prothrombin conversion accelerator)provided by HGNC
    Primary source
    HGNC:3544
    See related
    Ensembl:ENSG00000057593; HPRD:01965; MIM:613878; Vega:OTTHUMG00000017373
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SPCA
    Summary
    This gene encodes coagulation factor VII which is a vitamin K-dependent factor essential for hemostasis. This factor circulates in the blood in a zymogen form, and is converted to an active form by either factor IXa, factor Xa, factor XIIa, or thrombin by minor proteolysis. Upon activation of the factor VII, a heavy chain containing a catalytic domain and a light chain containing 2 EGF-like domains are generated, and two chains are held together by a disulfide bond. In the presence of factor III and calcium ions, the activated factor then further activates the coagulation cascade by converting factor IX to factor IXa and/or factor X to factor Xa. Defects in this gene can cause coagulopathy. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, May 2012]
    Location :
    13q34
    Sequence :
    Chromosome: 13; NC_000013.10 (113760102..113774995)

    Chromosome 13 - NC_000013.10Genomic Context describing neighboring genes Neighboring gene MCF2L antisense RNA 1 Neighboring gene MCF.2 cell line derived transforming sequence-like Neighboring gene lysyl-tRNA synthetase pseudogene 2 Neighboring gene coagulation factor X Neighboring gene protein Z, vitamin K-dependent plasma glycoprotein

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description
    P08709 P02768 ALB    HPRD  PubMed  
    P08709 P00742 F10    HPRD  PubMed  
    P08709 P13726 F3    HPRD  PubMed  
    P08709 P08709 F7    HPRD  PubMed  
    P08709 P00740 F9    HPRD  PubMed  
    P08709 P38435 GGCX    HPRD  PubMed  
    P08709 P05981 HPN    HPRD  PubMed  
    BioGRID:108453 BioGRID:106715 ALB    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:108453 BioGRID:108102 DMWD    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:108453 BioGRID:108457 F10    BioGRID  PubMed Biochemical Activity 
    BioGRID:108453 BioGRID:108451 F3    BioGRID  PubMed Co-crystal Structure; Reconstituted Complex 
    BioGRID:108453 BioGRID:117406 RCHY1    BioGRID  PubMed Two-hybrid 
    BioGRID:108453 BioGRID:119697 UIMC1    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:108453 BioGRID:117382 USP49    BioGRID  PubMed Affinity Capture-MS 

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    glycoprotein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    receptor binding IEA
    Inferred from Electronic Annotation
    more info
     
    serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    serine-type peptidase activity TAS
    Traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    blood coagulation TAS
    Traceable Author Statement
    more info
     
    blood coagulation, extrinsic pathway TAS
    Traceable Author Statement
    more info
     
    cellular protein metabolic process TAS
    Traceable Author Statement
    more info
     
    circadian rhythm IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of apoptotic process TAS
    Traceable Author Statement
    more info
    PubMed 
    organ regeneration IEA
    Inferred from Electronic Annotation
    more info
     
    peptidyl-glutamic acid carboxylation TAS
    Traceable Author Statement
    more info
     
    positive regulation of blood coagulation IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of cell migration TAS
    Traceable Author Statement
    more info
    PubMed 
    positive regulation of leukocyte chemotaxis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of platelet-derived growth factor receptor signaling pathway IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of positive chemotaxis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of protein kinase B signaling cascade IDA
    Inferred from Direct Assay
    more info
    PubMed 
    post-translational protein modification TAS
    Traceable Author Statement
    more info
     
    proteolysis TAS
    Traceable Author Statement
    more info
     
    response to estrogen stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    response to growth hormone stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    response to vitamin K IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    Golgi lumen TAS
    Traceable Author Statement
    more info
     
    endoplasmic reticulum lumen TAS
    Traceable Author Statement
    more info
     
    extracellular region TAS
    Traceable Author Statement
    more info
     
    extracellular space IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane TAS
    Traceable Author Statement
    more info
     
    vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    coagulation factor VII
    Names
    coagulation factor VII
    eptacog alfa
    proconvertin
    FVII coagulation protein
    NP_000122.1
    NP_001254483.1
    NP_062562.1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009262.1 RefSeqGene

      Range
      4998..19891
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_000131.4NP_000122.1  coagulation factor VII isoform a preproprotein

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
      Source sequence(s)
      AI076552, AK310779, AL137002, M13232
      Consensus CDS
      CCDS9528.1
      UniProtKB/Swiss-Prot
      P08709
      Related
      ENSP00000364731, OTTHUMP00000018733, ENST00000375581, OTTHUMT00000045838
      Conserved Domains (4) summary
      cd00054
      Location:106142
      Blast Score: 114
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00190
      Location:213449
      Blast Score: 557
      Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
      smart00069
      Location:42104
      Blast Score: 251
      GLA; Domain containing Gla (gamma-carboxyglutamate) residues.
      cl09941
      Location:151187
      Blast Score: 82
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    2. NM_001267554.1NP_001254483.1  coagulation factor VII isoform c preproprotein

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) lacks three consecutive exons in the 5' coding region, but maintains the reading frame, compared to variant 1. The encoded isoform (c) is shorter than isoform a.
      Source sequence(s)
      AI076552, AK298404, AK310779, AL137002
      UniProtKB/TrEMBL
      B4DPM2
      Conserved Domains (3) summary
      cd00054
      Location:2258
      Blast Score: 110
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00190
      Location:129365
      Blast Score: 546
      Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
      cl09941
      Location:67103
      Blast Score: 79
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    3. NM_019616.3NP_062562.1  coagulation factor VII isoform b preproprotein

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks an exon in the 5' coding region, but maintains the reading frame, compared to variant 1. The encoded isoform (b) is shorter than isoform a.
      Source sequence(s)
      AI076552, AK310779, AL137002, BC130468
      Consensus CDS
      CCDS9529.1
      UniProtKB/Swiss-Prot
      P08709
      Conserved Domains (4) summary
      cd00054
      Location:84120
      Blast Score: 113
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00190
      Location:191427
      Blast Score: 558
      Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
      smart00069
      Location:2182
      Blast Score: 247
      GLA; Domain containing Gla (gamma-carboxyglutamate) residues.
      cl09941
      Location:129165
      Blast Score: 81
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

    RNA

    1. NR_051961.1 RNA Sequence

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) lacks two internal exons and uses two alternate splice sites, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AI076552, AK310779, AK311682, AL137002

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000013.10 Reference GRCh37.p10 Primary Assembly

      Range
      113760102..113774995
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000145.1 Alternate HuRef

      Range
      94198534..94213700
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018924.1 Alternate CHM1_1.0

      Range
      94698084..94712988
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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