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Arcn1 archain 1 [ Mus musculus (house mouse) ]

Gene ID: 213827, updated on 8-May-2016
Official Symbol
Arcn1provided by MGI
Official Full Name
archain 1provided by MGI
Primary source
MGI:MGI:2387591
See related
Ensembl:ENSMUSG00000032096 Vega:OTTMUSG00000030776
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
nur17; 4632432M07Rik
Orthologs
Location:
9; 9 A5.2
Exon count:
10
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 9 NC_000075.6 (44742143..44767808, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (44550226..44575891, complement)

Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene trehalase (brush-border membrane glycoprotein) Neighboring gene pleckstrin homology like domain, family B, member 1 Neighboring gene intraflagellar transport 46 Neighboring gene transmembrane protein 25

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Chemically induced (ENU) (1)  1 citation
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC27546, MGC102316

Gene Ontology Provided by MGI

Function Evidence Code Pubs
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
Golgi vesicle transport IMP
Inferred from Mutant Phenotype
more info
PubMed 
adult locomotory behavior IMP
Inferred from Mutant Phenotype
more info
PubMed 
cerebellar Purkinje cell layer maturation IMP
Inferred from Mutant Phenotype
more info
PubMed 
pigmentation IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein transport IEA
Inferred from Electronic Annotation
more info
 
retrograde vesicle-mediated transport, Golgi to ER IEA
Inferred from Electronic Annotation
more info
 
transport IEA
Inferred from Electronic Annotation
more info
 
vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
COPI vesicle coat IEA
Inferred from Electronic Annotation
more info
 
COPI-coated vesicle IDA
Inferred from Direct Assay
more info
PubMed 
Golgi apparatus IDA
Inferred from Direct Assay
more info
PubMed 
Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
cell IMP
Inferred from Mutant Phenotype
more info
PubMed 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
endoplasmic reticulum IDA
Inferred from Direct Assay
more info
PubMed 
intracellular IMP
Inferred from Mutant Phenotype
more info
PubMed 
intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
coatomer subunit delta
Names
delta-COP
delta-coat protein
pale coat neuro

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145985.4NP_666097.3  coatomer subunit delta

    See identical proteins and their annotated locations for NP_666097.3

    Status: PROVISIONAL

    Source sequence(s)
    BC033387
    Consensus CDS
    CCDS40602.1
    UniProtKB/Swiss-Prot
    Q5XJY5
    Related
    ENSMUSP00000034607, OTTMUSP00000040065, ENSMUST00000034607, OTTMUST00000076178
    Conserved Domains (1) summary
    cd09254
    Location:272508
    AP_delta-COPI_MHD; Mu homology domain (MHD) of adaptor protein (AP) coat protein I (COPI) delta subunit

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000075.6 Reference GRCm38.p3 C57BL/6J

    Range
    44742143..44767808 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000031.1 Alternate Mm_Celera

    Range
    42006873..42032888 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)