These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
Genomic
-
NG_023240.1 RefSeqGene
- Range
- 5001..37518
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001163285.1 → NP_001156757.1 RNA-binding protein EWS isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks an alternate in-frame exon in the coding region, compared to variant 1, resulting in an isoform (3) that is shorter than isoform 1.
- Source sequence(s)
-
AK225102, AW205707, BC004817, DA013931, DB443651
- Consensus CDS
-
CCDS54513.1
- UniProtKB/Swiss-Prot
-
Q01844
- Related
- ENSP00000385726, OTTHUMP00000199147, ENST00000406548, OTTHUMT00000321346
- Conserved Domains (3) summary
-
- COG0724
Location:357 – 449
Blast Score: 127
- COG0724; RNA-binding proteins (RRM domain) [General function prediction only]
- cd00590
Location:362 – 443
Blast Score: 180
- RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
- pfam00641
Location:518 – 547
Blast Score: 124
- zf-RanBP; Zn-finger in Ran binding protein and others
-
NM_001163286.1 → NP_001156758.1 RNA-binding protein EWS isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks two alternate in-frame exons and uses an alternate in-frame splice site in the coding region, compared to variant 1. The resulting isoform (4) is shorter than isoform 1.
- Source sequence(s)
-
AK056681, AW205707, DA013931, DA051447, DB443651
- Consensus CDS
-
CCDS54514.1
- UniProtKB/Swiss-Prot
-
Q01844
- Conserved Domains (3) summary
-
- COG0724
Location:302 – 394
Blast Score: 131
- COG0724; RNA-binding proteins (RRM domain) [General function prediction only]
- cd00590
Location:307 – 388
Blast Score: 175
- RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
- pfam00641
Location:463 – 492
Blast Score: 121
- zf-RanBP; Zn-finger in Ran binding protein and others
-
NM_001163287.1 → NP_001156759.1 RNA-binding protein EWS isoform 5
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks an alternate in-frame exon in the 5' coding region, and differs in the 3' UTR and in the presence and absence of exons in the 3' coding region, compared to variant 1. The resulting isoform (5) has a distinct C-terminus and is shorter than isoform 1.
- Source sequence(s)
-
BC000527, DA013931, DB443651
- Consensus CDS
-
CCDS54512.1
- UniProtKB/Swiss-Prot
-
Q01844
- Related
- ENSP00000327456, OTTHUMP00000199148, ENST00000333395, OTTHUMT00000321348
-
NM_005243.3 → NP_005234.1 RNA-binding protein EWS isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an alternate in-frame exon and uses an alternate in-frame splice site in the coding region, compared to variant 1. The resulting isoform (2) is shorter than isoform 1.
- Source sequence(s)
-
AW205707, BC004817, DA013931, DB443651
- Consensus CDS
-
CCDS13851.1
- UniProtKB/Swiss-Prot
-
Q01844
- Related
- ENSP00000381031, OTTHUMP00000199146, ENST00000397938, OTTHUMT00000321345
- Conserved Domains (3) summary
-
- COG0724
Location:358 – 450
Blast Score: 127
- COG0724; RNA-binding proteins (RRM domain) [General function prediction only]
- cd00590
Location:363 – 444
Blast Score: 180
- RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
- pfam00641
Location:519 – 548
Blast Score: 124
- zf-RanBP; Zn-finger in Ran binding protein and others
-
NM_013986.3 → NP_053733.2 RNA-binding protein EWS isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AK056309, AW205707, DA013931, DB443651
- Consensus CDS
-
CCDS13852.2
- UniProtKB/Swiss-Prot
-
Q01844
- Related
- ENSP00000400142, OTTHUMP00000217043, ENST00000414183, OTTHUMT00000358290
- Conserved Domains (3) summary
-
- COG0724
Location:363 – 455
Blast Score: 131
- COG0724; RNA-binding proteins (RRM domain) [General function prediction only]
- cd00590
Location:368 – 449
Blast Score: 182
- RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
- pfam00641
Location:524 – 553
Blast Score: 125
- zf-RanBP; Zn-finger in Ran binding protein and others
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p10 Primary Assembly
Genomic
-
NC_000022.10 Reference GRCh37.p10 Primary Assembly
- Range
- 29663998..29696515
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000154.1 Alternate HuRef
- Range
- 12628341..12660759
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate CHM1_1.0
Genomic
-
NC_018933.1 Alternate CHM1_1.0
- Range
- 13585771..13618281
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)