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Sdc4 syndecan 4 [ Mus musculus (house mouse) ]

Gene ID: 20971, updated on 24-May-2016
Official Symbol
Sdc4provided by MGI
Official Full Name
syndecan 4provided by MGI
Primary source
MGI:MGI:1349164
See related
Ensembl:ENSMUSG00000017009 Vega:OTTMUSG00000001157
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
S4; Synd4; AA959608; AW108331; ryudocan; syndecan-4
Orthologs
Location:
2 H3; 2 85.16 cM
Exon count:
5
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 2 NC_000068.7 (164424247..164443188, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (164249747..164268688, complement)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene microRNA 7678 Neighboring gene secretory leukocyte peptidase inhibitor Neighboring gene matrilin 4 Neighboring gene recombination signal binding protein for immunoglobulin kappa J region-like Neighboring gene SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae) Neighboring gene transformation related protein 53 target 5 Neighboring gene dysbindin (dystrobrevin binding protein 1) domain containing 2 Neighboring gene uncharacterized LOC102638515

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
fibronectin binding ISO
Inferred from Sequence Orthology
more info
 
protein kinase C binding ISO
Inferred from Sequence Orthology
more info
 
thrombospondin receptor activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
inner ear receptor stereocilium organization IGI
Inferred from Genetic Interaction
more info
PubMed 
neural tube closure IGI
Inferred from Genetic Interaction
more info
PubMed 
positive regulation of exosomal secretion ISO
Inferred from Sequence Orthology
more info
 
positive regulation of extracellular exosome assembly ISO
Inferred from Sequence Orthology
more info
 
positive regulation of focal adhesion assembly ISO
Inferred from Sequence Orthology
more info
 
positive regulation of protein kinase activity ISO
Inferred from Sequence Orthology
more info
 
positive regulation of stress fiber assembly ISO
Inferred from Sequence Orthology
more info
 
regulation of fibroblast migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
wound healing IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
cell surface IDA
Inferred from Direct Assay
more info
PubMed 
cell surface ISO
Inferred from Sequence Orthology
more info
 
costamere ISO
Inferred from Sequence Orthology
more info
 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
extracellular region IEA
Inferred from Electronic Annotation
more info
 
focal adhesion ISO
Inferred from Sequence Orthology
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
membrane raft ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
syndecan-4
Names
ryudocan core protein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011521.2NP_035651.1  syndecan-4 precursor

    See identical proteins and their annotated locations for NP_035651.1

    Status: PROVISIONAL

    Source sequence(s)
    AL590429
    Consensus CDS
    CCDS17036.1
    UniProtKB/Swiss-Prot
    O35988
    UniProtKB/TrEMBL
    Q3U5S6
    Related
    ENSMUSP00000017153, OTTMUSP00000001098, ENSMUST00000017153, OTTMUST00000002252
    Conserved Domains (1) summary
    pfam01034
    Location:138196
    Syndecan; Syndecan domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p3 C57BL/6J

    Range
    164424247..164443188 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000024.1 Alternate Mm_Celera

    Range
    170361365..170380306 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)