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Sycp3 synaptonemal complex protein 3 [ Mus musculus (house mouse) ]

Gene ID: 20962, updated on 8-May-2016
Official Symbol
Sycp3provided by MGI
Official Full Name
synaptonemal complex protein 3provided by MGI
Primary source
MGI:MGI:109542
See related
Ensembl:ENSMUSG00000020059 Vega:OTTMUSG00000023468
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cor1; Scp3
Orthologs
Location:
10; 10 C
Exon count:
9
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 10 NC_000076.6 (88459587..88473236)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (87922332..87935981)

Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 40734 Neighboring gene predicted gene, 40733 Neighboring gene N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits Neighboring gene predicted gene, 40735 Neighboring gene choline phosphotransferase 1 Neighboring gene myosin binding protein C, slow-type Neighboring gene ribosomal protein L7A pseudogene

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Cell Cycle, organism-specific biosystem (from REACTOME)
    Cell Cycle, organism-specific biosystemcomputationally inferred pathway (not manually curated)
  • Homologous recombination, organism-specific biosystem (from KEGG)
    Homologous recombination, organism-specific biosystemHomologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves...
  • Homologous recombination, conserved biosystem (from KEGG)
    Homologous recombination, conserved biosystemHomologous recombination (HR) is essential for the accurate repair of DNA double-strand breaks (DSBs), potentially lethal lesions. HR takes place in the late S-G2 phase of the cell cycle and involves...
  • Meiosis, organism-specific biosystem (from REACTOME)
    Meiosis, organism-specific biosystemcomputationally inferred pathway (not manually curated)
  • Meiotic Synapsis, organism-specific biosystem (from REACTOME)
    Meiotic Synapsis, organism-specific biosystemMeiotic synapsis is the stable physical pairing of homologous chromosomes that begins in leptonema of prophase I and lasts until anaphase of prophase I. First, short segments of axial elements form a...
  • Meiotic synapsis, organism-specific biosystem (from REACTOME)
    Meiotic synapsis, organism-specific biosystemcomputationally inferred pathway (not manually curated)
  • Mus musculus biological processes, organism-specific biosystem (from REACTOME)
    Mus musculus biological processes, organism-specific biosystemCertain mouse pathways have been fully manually curated in Reactome in order to support the manual inference of well-conserved but less well-studied human pathways. These pathways include Circadian...
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein heterodimerization activity IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
cell cycle IEA
Inferred from Electronic Annotation
more info
 
cell division IEA
Inferred from Electronic Annotation
more info
 
chiasma assembly IDA
Inferred from Direct Assay
more info
PubMed 
chiasma assembly IGI
Inferred from Genetic Interaction
more info
PubMed 
female meiosis chromosome segregation IDA
Inferred from Direct Assay
more info
PubMed 
female meiosis chromosome separation NAS
Non-traceable Author Statement
more info
PubMed 
female meiosis sister chromatid cohesion IDA
Inferred from Direct Assay
more info
PubMed 
lateral element assembly IGI
Inferred from Genetic Interaction
more info
PubMed 
meiotic DNA repair synthesis IGI
Inferred from Genetic Interaction
more info
PubMed 
meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
 
meiotic nuclear division IDA
Inferred from Direct Assay
more info
PubMed 
mitotic nuclear division IDA
Inferred from Direct Assay
more info
PubMed 
negative regulation of apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
sperm chromatin condensation IGI
Inferred from Genetic Interaction
more info
PubMed 
spermatogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
spermatogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
spermatogenesis, exchange of chromosomal proteins ISO
Inferred from Sequence Orthology
more info
 
synapsis IMP
Inferred from Mutant Phenotype
more info
PubMed 
synaptonemal complex assembly IDA
Inferred from Direct Assay
more info
PubMed 
synaptonemal complex assembly IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
chromosome IDA
Inferred from Direct Assay
more info
PubMed 
chromosome, centromeric region IEA
Inferred from Electronic Annotation
more info
 
condensed chromosome IDA
Inferred from Direct Assay
more info
PubMed 
condensed nuclear chromosome IDA
Inferred from Direct Assay
more info
PubMed 
condensed nuclear chromosome, centromeric region IDA
Inferred from Direct Assay
more info
PubMed 
lateral element IDA
Inferred from Direct Assay
more info
PubMed 
lateral element ISO
Inferred from Sequence Orthology
more info
 
male germ cell nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 
synaptonemal complex IDA
Inferred from Direct Assay
more info
PubMed 
transverse filament IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
synaptonemal complex protein 3
Names
SCP-3

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011517.2NP_035647.2  synaptonemal complex protein 3

    See identical proteins and their annotated locations for NP_035647.2

    Status: VALIDATED

    Source sequence(s)
    BC138509, BY386732
    Consensus CDS
    CCDS24111.1
    UniProtKB/Swiss-Prot
    P70281
    UniProtKB/TrEMBL
    A2RSE7
    Related
    ENSMUSP00000020252, OTTMUSP00000027498, ENSMUST00000020252, OTTMUST00000057079
    Conserved Domains (1) summary
    pfam04803
    Location:100229
    Cor1; Cor1/Xlr/Xmr conserved region

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000076.6 Reference GRCm38.p3 C57BL/6J

    Range
    88459587..88473236
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000032.1 Alternate Mm_Celera

    Range
    90439295..90453077
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)