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Ssb Sjogren syndrome antigen B [ Mus musculus (house mouse) ]

Gene ID: 20823, updated on 8-May-2016
Official Symbol
Ssbprovided by MGI
Official Full Name
Sjogren syndrome antigen Bprovided by MGI
Primary source
MGI:MGI:98423
See related
Ensembl:ENSMUSG00000068882 Vega:OTTMUSG00000013038
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SS-B
Orthologs
Location:
2 C2; 2 40.95 cM
Exon count:
12
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 2 NC_000068.7 (69861562..69871846)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (69699619..69709903)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39841 Neighboring gene kelch-like 23 Neighboring gene methyltransferase like 5 Neighboring gene ubiquitin protein ligase E3 component n-recognin 3 Neighboring gene myosin IIIB

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Systemic lupus erythematosus, organism-specific biosystem (from KEGG)
    Systemic lupus erythematosus, organism-specific biosystemSystemic lupus erythematosus (SLE) is a prototypic autoimmune disease characterised by the production of IgG autoantibodies that are specific for self-antigens, such as DNA, nuclear proteins and cert...
  • Systemic lupus erythematosus, conserved biosystem (from KEGG)
    Systemic lupus erythematosus, conserved biosystemSystemic lupus erythematosus (SLE) is a prototypic autoimmune disease characterised by the production of IgG autoantibodies that are specific for self-antigens, such as DNA, nuclear proteins and cert...
  • mRNA processing, organism-specific biosystem (from WikiPathways)
    mRNA processing, organism-specific biosystemAdapted from Reactome, see: [http://www.reactome.org/cgi-bin/eventbrowser_st_id?ST_ID=REACT_1675.1 REACT 1675.1] This process describes the conversion of precursor messenger RNA into mature messenge...
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC118101

Gene Ontology Provided by MGI

Function Evidence Code Pubs
RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
IRES-dependent viral translational initiation ISO
Inferred from Sequence Orthology
more info
 
RNA processing IEA
Inferred from Electronic Annotation
more info
 
protein localization to cytoplasmic stress granule ISO
Inferred from Sequence Orthology
more info
 
tRNA processing ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
intracellular ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
nuclear chromosome, telomeric region ISO
Inferred from Sequence Orthology
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
lupus La protein homolog
Names
La protein
Lupus LA protein homolog (LA ribonucleoprotein) (LA autoantigen homolog)
autoantigen La
la autoantigen homolog
la ribonucleoprotein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001110145.1NP_001103615.1  lupus La protein homolog

    See identical proteins and their annotated locations for NP_001103615.1

    Status: VALIDATED

    Source sequence(s)
    AL845261, AL929249, BX322634
    Consensus CDS
    CCDS16101.1
    UniProtKB/Swiss-Prot
    P32067
    UniProtKB/TrEMBL
    Q564E6
    Related
    ENSMUSP00000088365, OTTMUSP00000014043, ENSMUST00000090852, OTTMUST00000031436
    Conserved Domains (3) summary
    cd08028
    Location:1091
    LARP_3; La RNA-binding domain of La-related protein 3
    cd12291
    Location:112183
    RRM1_La; RNA recognition motif 1 in La autoantigen (La or LARP3) and similar proteins
    cd12541
    Location:230306
    RRM2_La; RNA recognition motif 2 in La autoantigen (La or LARP3) and similar proteins
  2. NM_009278.4NP_033304.1  lupus La protein homolog

    See identical proteins and their annotated locations for NP_033304.1

    Status: VALIDATED

    Source sequence(s)
    AL845261, AL929249, BX322634
    Consensus CDS
    CCDS16101.1
    UniProtKB/Swiss-Prot
    P32067
    UniProtKB/TrEMBL
    Q564E6
    Related
    ENSMUSP00000130313, ENSMUST00000166411
    Conserved Domains (3) summary
    cd08028
    Location:1091
    LARP_3; La RNA-binding domain of La-related protein 3
    cd12291
    Location:112183
    RRM1_La; RNA recognition motif 1 in La autoantigen (La or LARP3) and similar proteins
    cd12541
    Location:230306
    RRM2_La; RNA recognition motif 2 in La autoantigen (La or LARP3) and similar proteins

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p3 C57BL/6J

    Range
    69861562..69871846
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006499069.2XP_006499132.1  

    Conserved Domains (3) summary
    cd08028
    Location:1091
    LARP_3; La RNA-binding domain of La-related protein 3
    cd12291
    Location:112183
    RRM1_La; RNA recognition motif 1 in La autoantigen (La or LARP3) and similar proteins
    cd12541
    Location:230306
    RRM2_La; RNA recognition motif 2 in La autoantigen (La or LARP3) and similar proteins

Alternate Mm_Celera

Genomic

  1. AC_000024.1 Alternate Mm_Celera

    Range
    71531605..71541890
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)