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Srm spermidine synthase [ Mus musculus (house mouse) ]

Gene ID: 20810, updated on 8-May-2016
Official Symbol
Srmprovided by MGI
Official Full Name
spermidine synthaseprovided by MGI
Primary source
MGI:MGI:102690
See related
Ensembl:ENSMUSG00000006442 Vega:OTTMUSG00000010928
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SpdST; SpdSy; AA407669
Orthologs
Location:
4; 4 E2
Exon count:
7
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 4 NC_000070.6 (148591513..148594619)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (147965622..147968728)

Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene mechanistic target of rapamycin (serine/threonine kinase) Neighboring gene angiopoietin-like 7 Neighboring gene 40S ribosomal protein S2 pseudogene Neighboring gene exosome component 10 Neighboring gene mannan-binding lectin serine peptidase 2 Neighboring gene TAR DNA binding protein Neighboring gene predicted gene 572

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
catalytic activity IEA
Inferred from Electronic Annotation
more info
 
protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
spermidine synthase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
spermidine synthase activity ISO
Inferred from Sequence Orthology
more info
 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
polyamine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
polyamine metabolic process IEA
Inferred from Electronic Annotation
more info
 
spermidine biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
 
spermidine biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
spermidine synthase
Names
putrescine aminopropyltransferase
NP_033298.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009272.4NP_033298.1  spermidine synthase

    See identical proteins and their annotated locations for NP_033298.1

    Status: PROVISIONAL

    Source sequence(s)
    AL606969
    Consensus CDS
    CCDS18940.1
    UniProtKB/Swiss-Prot
    Q64674
    UniProtKB/TrEMBL
    Q543H0
    Related
    ENSMUSP00000006611, OTTMUSP00000011743, ENSMUST00000006611, OTTMUST00000025629
    Conserved Domains (1) summary
    cd02440
    Location:96206
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000070.6 Reference GRCm38.p3 C57BL/6J

    Range
    148591513..148594619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCm38.p3 NOD/MrkTac

Genomic

  1. NT_166299.2 Reference GRCm38.p3 NOD/MrkTac

    Range
    2004749..2007866
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000026.1 Alternate Mm_Celera

    Range
    150853070..150856182
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)