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    Snrpe small nuclear ribonucleoprotein E [ Mus musculus (house mouse) ]

    Gene ID: 20643, updated on 26-Feb-2013
    Official Symbol
    Snrpeprovided by MGI
    Official Full Name
    small nuclear ribonucleoprotein Eprovided by MGI
    Primary source
    MGI:98346
    See related
    Ensembl:ENSMUSG00000090553; Vega:OTTMUSG00000035312
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    SME; C76690; AL022645
    Location :
    1 E4; 1
    Sequence :
    Chromosome: 1; NC_000067.6 (133603871..133610280, complement)
    See Snrpe in Epigenomics, MapViewer

    Chromosome 1 - NC_000067.6Genomic Context describing neighboring genes Neighboring gene SRY-box containing gene 13 Neighboring gene ribosomal protein L7A pseudogene Neighboring gene zinc finger CCCH type containing 11A Neighboring gene zinc finger, BED domain containing 6 Neighboring gene lymphocyte transmembrane adaptor 1

    Go to nucleotideGraphics FASTA GenBank

    Go to reference sequence details

    Related articles in PubMed

    1. ENU mutagenesis in mice identifies candidate genes for hypogonadism. Weiss J, et al. Mamm Genome, 2012 Jun. PMID 22258617.
    2. Expression of B-RAF V600E in type II pneumocytes causes abnormalities in alveolar formation, airspace enlargement and tumor formation in mice. Zanucco E, et al. PLoS One, 2011. PMID 22194995.
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068.
    4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693.
    5. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821.

    See all (21) citations in PubMed

    See citations in PubMed for homologs of this gene provided by HomoloGene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Submit: New GeneRIF Correction
    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Markers

    Genotypes

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		  
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    U12-type spliceosomal complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    U7 snRNP ISO
    Inferred from Sequence Orthology
    more info
    		  
    catalytic step 2 spliceosome ISO
    Inferred from Sequence Orthology
    more info
    		  
    nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    Preferred Names
    small nuclear ribonucleoprotein E
    Names
    small nuclear ribonucleoprotein E
    sm-E
    snRNP-E
    sm protein E

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009227.3 → NP_033253.1  small nuclear ribonucleoprotein E

      Status: VALIDATED

      Source sequence(s)
      AW492281, BY168551
      Consensus CDS
      CCDS48364.1
      UniProtKB/Swiss-Prot
      P62305
      Related
      ENSMUSP00000128400, OTTMUSP00000049358, ENSMUST00000166915, OTTMUST00000090098
      Conserved Domains (1) summary
      cd01718
      Location:17 – 89
      Blast Score: 386
      Sm_E; Sm protein E

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 103

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p1 C57BL/6J

    Genomic

    1. NC_000067.6 Reference GRCm38.p1 C57BL/6J

      Range
      133603871..133610280, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Mm_Celera

    Genomic

    1. AC_000023.1 Alternate Mm_Celera

      Range
      136217848..136224256, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    genomic AAHY01011075.1 (9743..16151) None
    genomic AC124338.11 (108780..115160) None
    genomic CH466520.2 EDL39643.1 mixed
      EDL39644.1 mixed
    genomic X65703.1 CAA46625.1
    mRNA AK019462.1 BAB31734.1 C57BL/6J
    mRNA AW492281.1 None C57BL/6J
    mRNA BC008262.1 AAH08262.1
    mRNA BC051207.1 AAH51207.1 C57BL/6J
    mRNA BC055765.1 AAH55765.1 C57BL/6
    mRNA BY168551.1 None C57BL/6J
    mRNA X65704.1 CAA46626.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    P62305.1 GenPept UniProtKB/Swiss-Prot:P62305

    Additional Links

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous

      Supplemental Content

      Table of contents

      Related information

      • Order cDNA clone
        Order cDNA clone
      • 3D structures
        3D structure of a gene
      • BioProjects
        BioProjects related to a gene
      • BioSystems
        BioSystems
      • CCDS
        Links from Gene to CCDS are established if a gene encodes a protein sequence that is a member of a Consensus CDS (CCDS).
      • Conserved Domains
        Conserved Domain Database Links between Entrez Gene and Conserved Domain Database (CDD) are calculated from the domains annotated by the CDD group on Reference Sequence proteins.
      • EST
        Link to related EST entry
      • Full text in PMC
        PMC links
      • Full text in PMC_nucleotide
        Full text in PubMedCentral identified from shared sequence links
      • Genome
        Genome records having the gene annotated on corresponding genomic reference sequence.
      • GEO Profiles
        Related GEO
      • HomoloGene
        Links between HomoloGene and Gene are provided by the HomoloGene group when a gene is included in a HomoloGene record.
      • Map Viewer
        These links are maintained by the Map Viewer group and are provided when a GeneID is annotated on a map for the same species.
      • Nucleotide
        Link to related Nucleotide entry
      • Probe
        Related Probe entry
      • Protein
        Link to related protein entry
      • PubChem Compound
        PubChem Compounds
      • PubChem Substance
        PubChem Substances
      • PubMed
        Links between Gene and PubMed are the result of the following: 1. Manual curation within NCBI. Part of the process of generating a REVIEWED RefSeq is an analysis of the current literature. Papers that are seminal in defining the gene, its sequence, and its function are added to the record at that time. Alert users point out gaps or errors in papers associated with a Gene record. These messages are reviewed and implemented as required. 2. Integration of information from other public databases. Gene integrates gene-citation from resources external to NCBI such as model organism-specific databases, Gene Ontology (GO), groups curating interactions, and sequence databases. The assumption in using these source is that they report citations specific to a gene in a known species. Gene does not process citations from OMIM automatically, because many of citations in OMIM refer to studies of genes in species other than human.
      • PubMed(nucleotide/PMC)
        Citations in PubMed identified from shared sequence and PMC links.
      • RefSeq Proteins
        Link to Protein RefSeqs
      • RefSeq RNAs
        Link to Nucleotide RefSeq RNAs
      • SNP
        Related SNP records
      • SNP: GeneView
        SNPs linked from GeneView
      • Taxonomy
        Link to related taxonomy entry
      • UniGene
        Links are provided between Gene and UniGene when both databases calculate links to the same mRNA record (gi).
      • UniSTS
        Related UniSTS records

      Links to other resources

      General information

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