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Sftpc surfactant associated protein C [ Mus musculus (house mouse) ]

Gene ID: 20389, updated on 30-May-2016
Official Symbol
Sftpcprovided by MGI
Official Full Name
surfactant associated protein Cprovided by MGI
Primary source
MGI:MGI:109517
See related
Ensembl:ENSMUSG00000022097
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SP5; SPC; SP-C; Sftp2; Bricd6; Sftp-2; pro-SpC
Orthologs
Location:
14 D2; 14 36.32 cM
Exon count:
6
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 14 NC_000080.6 (70520941..70524081, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (70920748..70923888, complement)

Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein 1 Neighboring gene predicted gene, 41202 Neighboring gene predicted gene, 41201 Neighboring gene leucine-rich repeat LGI family, member 3 Neighboring gene receptor accessory protein 4

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
protein homooligomerization ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
alveolar lamellar body ISO
Inferred from Sequence Orthology
more info
 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
extracellular region IDA
Inferred from Direct Assay
more info
PubMed 
extracellular space ISO
Inferred from Sequence Orthology
more info
 
multivesicular body ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
pulmonary surfactant-associated protein C
Names
pulmonary surfactant-associated proteolipid SPL(Val)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011359.2NP_035489.2  pulmonary surfactant-associated protein C precursor

    See identical proteins and their annotated locations for NP_035489.2

    Status: VALIDATED

    Source sequence(s)
    AC122268, BY773034, CJ093163, CJ237354
    Consensus CDS
    CCDS27254.1
    UniProtKB/TrEMBL
    Q6P8P8
    Related
    ENSMUSP00000022692, ENSMUST00000022692
    Conserved Domains (3) summary
    pfam08999
    Location:193
    SP_C-Propep; Surfactant protein C, N terminal propeptide
    smart00019
    Location:1193
    SF_P; Pulmonary surfactant proteins
    pfam04089
    Location:94193
    BRICHOS; BRICHOS domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000080.6 Reference GRCm38.p3 C57BL/6J

    Range
    70520941..70524081 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000036.1 Alternate Mm_Celera

    Range
    68062491..68065631 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)