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    C9orf72 chromosome 9 open reading frame 72 [ Homo sapiens (human) ]

    Gene ID: 203228, updated on 13-Jun-2013
    Official Symbol
    C9orf72provided by HGNC
    Official Full Name
    chromosome 9 open reading frame 72provided by HGNC
    Primary source
    HGNC:28337
    See related
    Ensembl:ENSG00000147894; HPRD:12975; MIM:614260; Vega:OTTHUMG00000019716
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ALSFTD; FTDALS
    Summary
    Expansion of a hexanucleotide repeat in non-coding sequence between alternate 5' exons in transcripts from this gene is associated with 9p-linked ALS (amyotrophic lateral sclerosis) and FTD (frontotemporal dementia) (PMID: 21944778, 21944779). Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2011]
    Location :
    9p21.2
    Sequence :
    Chromosome: 9; NC_000009.11 (27546543..27573864, complement)
    See C9orf72 in Epigenomics, MapViewer

    Chromosome 9 - NC_000009.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100506449 Neighboring gene MOB kinase activator 3B Neighboring gene CTAGE family, member 12, pseudogene Neighboring gene interferon, kappa Neighboring gene leucine rich repeat and Ig domain containing 2 Neighboring gene UPF0607 protein ENSP00000381418-like pseudogene

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Amyotrophic lateral sclerosis

    Summary from GeneReviews: Amyotrophic Lateral Sclerosis Overview Go to GeneReviews

    Disease Characteristics
    Amyotrophic lateral sclerosis (ALS) is a progressive neurodegenerative disease involving both upper motor neurons (UMN) and lower motor neurons (LMN). UMN signs include hyperreflexia, extensor plantar response, increased muscle tone, and weakness in a topographic representation. LMN signs include weakness, muscle wasting, hyporeflexia, muscle cramps, and fasciculations. Initial presentation varies. Affected individuals typically present with either asymmetric focal weakness of the extremities (stumbling or poor handgrip) or bulbar findings (dysarthria, dysphagia). Other findings may include muscle fasciculations, muscle cramps, and labile affect, but not necessarily mood. Regardless of initial symptoms, atrophy and weakness eventually affect other muscles. The mean age of onset is 56 years in individuals with no known family history and 46 years in individuals with more than one affected family member (familial ALS or FALS). Average disease duration is about three years, but it can vary significantly. Death usually results from compromise of the respiratory muscles.
    Diagnosis Testing
    The diagnosis of ALS is based on clinical features, electrodiagnostic testing, and exclusion of other health conditions with related symptoms. Molecular genetic testing plays a prominent role in diagnosis of the genetic subtype and genetic counseling.
    Genetic Counseling
    Amyotrophic lateral sclerosis can be inherited in an autosomal dominant, autosomal recessive, or X-linked manner. Genetic counseling and risk assessment depend on accurate determination of the specific genetic diagnosis.
    References

    Frontotemporal dementia and/or amyotrophic lateral sclerosis

    Summary from GeneReviews: Amyotrophic Lateral Sclerosis Overview Go to GeneReviews

    Disease Characteristics
    Amyotrophic lateral sclerosis (ALS) is a progressive neurodegenerative disease involving both upper motor neurons (UMN) and lower motor neurons (LMN). UMN signs include hyperreflexia, extensor plantar response, increased muscle tone, and weakness in a topographic representation. LMN signs include weakness, muscle wasting, hyporeflexia, muscle cramps, and fasciculations. Initial presentation varies. Affected individuals typically present with either asymmetric focal weakness of the extremities (stumbling or poor handgrip) or bulbar findings (dysarthria, dysphagia). Other findings may include muscle fasciculations, muscle cramps, and labile affect, but not necessarily mood. Regardless of initial symptoms, atrophy and weakness eventually affect other muscles. The mean age of onset is 56 years in individuals with no known family history and 46 years in individuals with more than one affected family member (familial ALS or FALS). Average disease duration is about three years, but it can vary significantly. Death usually results from compromise of the respiratory muscles.
    Diagnosis Testing
    The diagnosis of ALS is based on clinical features, electrodiagnostic testing, and exclusion of other health conditions with related symptoms. Molecular genetic testing plays a prominent role in diagnosis of the genetic subtype and genetic counseling.
    Genetic Counseling
    Amyotrophic lateral sclerosis can be inherited in an autosomal dominant, autosomal recessive, or X-linked manner. Genetic counseling and risk assessment depend on accurate determination of the specific genetic diagnosis.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    BioGRID:128456 BioGRID:106848 APP    BioGRID  PubMed Reconstituted Complex 
    BioGRID:128456 BioGRID:108309 ELAVL1    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:128456 BioGRID:122103 MMS19    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:128456 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 

    Markers

    Homology

    Clone Names

    • MGC23980

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    cell death IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    protein C9orf72
    Names
    protein C9orf72

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_031977.1 RefSeqGene

      Range
      5001..32322
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001256054.1NP_001242983.1  protein C9orf72 isoform a

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR and 3' coding region and UTR compared to variant 1. The resulting protein (isoform a) is longer compared to isoform 1. Variants 2 and 3 encode the same protein.
      Source sequence(s)
      AL451123, JN681271
      Consensus CDS
      CCDS6522.1
      UniProtKB/Swiss-Prot
      Q96LT7
    2. NM_018325.3NP_060795.1  protein C9orf72 isoform a

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and 3' coding region and UTR compared to variant 1. The resulting protein (isoform a) is longer compared to isoform 1. Variants 2 and 3 encode the same protein.
      Source sequence(s)
      AK001971, AK291425, AL451123, BC020851, BC039112, BC068445
      Consensus CDS
      CCDS6522.1
      UniProtKB/Swiss-Prot
      Q96LT7
      UniProtKB/TrEMBL
      Q9NUW0
      Related
      ENSP00000369339, OTTHUMP00000021170, ENST00000380003, OTTHUMT00000051969
    3. NM_145005.5NP_659442.2  protein C9orf72 isoform b

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the shortest transcript and encodes the shorter protein (isoform b).
      Source sequence(s)
      AK057806, AL451123, BC020851
      Consensus CDS
      CCDS6523.1
      UniProtKB/Swiss-Prot
      Q96LT7
      Related
      ENSP00000369333, OTTHUMP00000021171, ENST00000379997, OTTHUMT00000051971

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000009.11 Reference GRCh37.p10 Primary Assembly

      Range
      27546543..27573864, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000141.1 Alternate HuRef

      Range
      27499333..27526665, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018920.1 Alternate CHM1_1.0

      Range
      27522997..27550345, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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