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S100a6 S100 calcium binding protein A6 (calcyclin) [ Mus musculus (house mouse) ]

Gene ID: 20200, updated on 8-May-2016
Official Symbol
S100a6provided by MGI
Official Full Name
S100 calcium binding protein A6 (calcyclin)provided by MGI
Primary source
MGI:MGI:1339467
See related
Ensembl:ENSMUSG00000001025 Vega:OTTMUSG00000052755
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2A9; PRA; 5B10; Cacy; CALCYCLIN
Orthologs
Location:
3 39.35 cM; 3 F1-F2
Exon count:
3
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 3 NC_000069.6 (90612894..90614414)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (90416816..90418336)

Chromosome 3 - NC_000069.6Genomic Context describing neighboring genes Neighboring gene S100 calcium binding protein A4 Neighboring gene S100 calcium binding protein A5 Neighboring gene 60S ribosomal protein L39-like Neighboring gene S100 calcium binding protein A7A

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
S100 protein binding ISO
Inferred from Sequence Orthology
more info
 
calcium ion binding IDA
Inferred from Direct Assay
more info
PubMed 
calcium ion binding ISO
Inferred from Sequence Orthology
more info
 
calcium-dependent protein binding ISO
Inferred from Sequence Orthology
more info
 
ion transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
tropomyosin binding ISO
Inferred from Sequence Orthology
more info
 
zinc ion binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
ion transmembrane transport ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
extrinsic component of cytoplasmic side of plasma membrane ISO
Inferred from Sequence Orthology
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
nuclear envelope ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
ruffle ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
protein S100-A6
Names
S100 calcium-binding protein A6
calcium binding protein A6 (calcyclin)
prolactin receptor-associated protein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011313.2NP_035443.1  protein S100-A6

    See identical proteins and their annotated locations for NP_035443.1

    Status: VALIDATED

    Source sequence(s)
    AK008941, BM932500
    Consensus CDS
    CCDS38506.1
    UniProtKB/Swiss-Prot
    P14069
    UniProtKB/TrEMBL
    Q545I9
    Related
    ENSMUSP00000001051, OTTMUSP00000070487, ENSMUST00000001051, OTTMUST00000132086
    Conserved Domains (2) summary
    cd05029
    Location:188
    S-100A6; S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand ...
    pfam13499
    Location:2877
    EF-hand_7; EF-hand domain pair

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000069.6 Reference GRCm38.p3 C57BL/6J

    Range
    90612894..90614414
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000025.1 Alternate Mm_Celera

    Range
    90654296..90655816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)