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    ELN elastin [ Homo sapiens ]

    Gene ID: 2006, updated on 11-May-2012

    Summary

    Official Symbol
    ELNprovided by HGNC
    Official Full Name
    elastinprovided by HGNC
    Primary source
    HGNC:3327
    See related
    Ensembl:ENSG00000049540; HPRD:00556; MIM:130160; Vega:OTTHUMG00000150229
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    WS; WBS; SVAS; FLJ38671; FLJ43523
    Summary
    This gene encodes a protein that is one of the two components of elastic fibers. The encoded protein is rich in hydrophobic amino acids such as glycine and proline, which form mobile hydrophobic regions bounded by crosslinks between lysine residues. Deletions and mutations in this gene are associated with supravalvular aortic stenosis (SVAS) and autosomal dominant cutis laxa. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

    Genomic context

    Location :
    7q11.23
    Sequence :
    Chromosome: 7; NC_000007.13 (73442427..73484237)

    Chromosome 7 - NC_000007.13Genomic Context describing neighboring genes Neighboring gene Williams Beuren syndrome chromosome region 27 Neighboring gene Williams-Beuren syndrome chromosome region 28 Neighboring gene LIM domain kinase 1 Neighboring gene eukaryotic translation initiation factor 4H Neighboring gene microRNA 590

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Phenotypes

    Cutis laxa, AD

    Supravalvar aortic stenosis

    Williams-Beuren syndrome

    Summary from GeneReviews: Go to GeneReviews

    Disease Characteristics
    Williams syndrome (WS) is characterized by cardiovascular disease (elastin arteriopathy, peripheral pulmonary stenosis, supravalvular aortic stenosis, hypertension), distinctive facies, connective tissue abnormalities, intellectual disability (usually mild), a specific cognitive profile, unique personality characteristics, growth abnormalities, and endocrine abnormalities (hypercalcemia, hypercalciuria, hypothyroidism, and early puberty). Feeding difficulties often lead to failure to thrive in infancy. Hypotonia and hyperextensible joints can result in delayed attainment of motor milestones.
    Diagnosis Testing
    Clinical diagnostic criteria are available for Williams syndrome; however, the mainstay for diagnosis is detection of the contiguous gene deletion of the Williams-Beuren syndrome critical region (WBSCR) that encompasses the elastin gene, ELN. Over 99% of individuals with the clinical diagnosis of WS have this contiguous gene deletion, which can be detected using fluorescent in situ hybridization (FISH) or targeted mutation analysis.
    Genetic Counseling
    Williams syndrome is transmitted in an autosomal dominant manner. Most cases are de novo occurrences, but occasionally, parent-to-child transmission is observed. Prenatal testing is clinically available, but is rarely used because most cases occur in a single family member only and no prenatal indicators exist for low-risk pregnancies.
    References

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description
    NP_000492.1 NP_031387.2 NID2    BIND  PubMed Tropoelastin interacts with Nidogen-2. 
    P15502 P00966 ASS1    HPRD  PubMed  
    P15502 P21810 BGN    HPRD  PubMed  
    P15502 P07585 DCN    HPRD  PubMed  
    P15502 P08246 ELANE    HPRD  PubMed  
    P15502 P23142 FBLN1    HPRD  PubMed  
    P15502 P98095 FBLN2    HPRD  PubMed  
    P15502 P35555 FBN1    HPRD  PubMed  
    P15502 P35556 FBN2    HPRD  PubMed  
    P15502 O00602 FCN1    HPRD  PubMed  
    P15502 Q96AY3 FKBP10    HPRD  PubMed  
    P15502 P17931 LGALS3    HPRD  PubMed  
    P15502 P28300 LOX    HPRD  PubMed  
    P15502 Q08397 LOXL1    HPRD  PubMed  
    P15502 P61626 LYZ    HPRD  PubMed  
    P15502 P55001 MFAP2    HPRD  PubMed  
    P15502 Q14112 NID2    HPRD  PubMed  
    P15502 P24158 PRTN3    HPRD  PubMed  
    P15502 P00995 SPINK1    HPRD  PubMed  
    BioGRID:108321 BioGRID:107102 BGN    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108321 BioGRID:108002 DCN    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108321 BioGRID:108486 FBLN1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108321 BioGRID:108493 FBLN2    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108321 BioGRID:108494 FBN1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108321 BioGRID:108495 FBN2    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108321 BioGRID:108513 FCN1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108321 BioGRID:110149 LGALS3    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex 
    BioGRID:108321 BioGRID:116476 NID2    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108321 BioGRID:111638 PRTN3    BioGRID  PubMed Biochemical Activity 

    General gene information

    Markers

    Homology

    Pathways from BioSystems

    • Protein digestion and absorption, organism-specific biosystem (from KEGG)
      Protein digestion and absorption, organism-specific biosystemProtein is a dietary component essential for nutritional homeostasis in humans. Normally, ingested protein undergoes a complex series of degradative processes following the action of gastric, pancrea...
    • Protein digestion and absorption, conserved biosystem (from KEGG)
      Protein digestion and absorption, conserved biosystemProtein is a dietary component essential for nutritional homeostasis in humans. Normally, ingested protein undergoes a complex series of degradative processes following the action of gastric, pancrea...

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    extracellular matrix constituent conferring elasticity NAS
    Non-traceable Author Statement
    more info
     
    extracellular matrix structural constituent TAS
    Traceable Author Statement
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    blood circulation TAS
    Traceable Author Statement
    more info
    PubMed 
    cell proliferation TAS
    Traceable Author Statement
    more info
    PubMed 
    organ morphogenesis TAS
    Traceable Author Statement
    more info
    PubMed 
    respiratory gaseous exchange TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    proteinaceous extracellular matrix NAS
    Non-traceable Author Statement
    more info
     

    General protein information

    Preferred Names
    elastin
    Names
    elastin
    tropoelastin

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009261.1 RefSeqGene

      Range
      5001..46811
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_000501.2NP_000492.2  elastin isoform a precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
      Source sequence(s)
      AF086171, BC035570, BP284909
      Consensus CDS
      CCDS5562.2
      UniProtKB/Swiss-Prot
      P15502
      Related
      ENSP00000252034, OTTHUMP00000196667, ENST00000252034, OTTHUMT00000316913
    2. NM_001081752.1NP_001075221.1  elastin isoform b precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks alternate in-frame exons, compared to variant 1, resulting in a shorter protein (isoform b), compared to isoform a.
      Source sequence(s)
      AF086171, AK092232, AK095990, BC035570, BP284909, BX538199
      Consensus CDS
      CCDS43599.1
      UniProtKB/TrEMBL
      B3KRT8
      UniProtKB/Swiss-Prot
      P15502
      Related
      ENSP00000369949, OTTHUMP00000211860, ENST00000380575, OTTHUMT00000348232
    3. NM_001081753.1NP_001075222.1  elastin isoform c precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) lacks alternate in-frame exons, compared to variant 1, resulting in a shorter protein (isoform c), compared to isoform a.
      Source sequence(s)
      AF086171, AK092232, AK095990, BC035570, BP284909
      Consensus CDS
      CCDS47611.1
      UniProtKB/TrEMBL
      B3KRT8
      UniProtKB/Swiss-Prot
      P15502
      Related
      ENSP00000391129, OTTHUMP00000211864, ENST00000429192, OTTHUMT00000348236
    4. NM_001081754.1NP_001075223.1  elastin isoform d precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (4) lacks an alternate in-frame exon, compared to variant 1, resulting in a shorter protein (isoform d), compared to isoform a.
      Source sequence(s)
      AF086171, AK095990, BC035570, BP284909
      Consensus CDS
      CCDS43598.1
      UniProtKB/Swiss-Prot
      P15502
      Related
      ENSP00000349540, OTTHUMP00000211863, ENST00000357036, OTTHUMT00000348235
    5. NM_001081755.1NP_001075224.1  elastin isoform e precursor

      Status: REVIEWED

      Description
      Transcript Variant: This variant (5) lacks alternate in-frame exons and uses an alternate in-frame splice site in the 5' coding region, compared to variant 1, resulting in a shorter protein (isoform e), compared to isoform a.
      Source sequence(s)
      AK225659, BC035570, BC050379, BP284909
      Consensus CDS
      CCDS47612.1
      UniProtKB/Swiss-Prot
      P15502
      Related
      ENSP00000369950, OTTHUMP00000211866, ENST00000380576, OTTHUMT00000348238

    RefSeqs of Annotated Genomes: Build 37.3

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p5 Primary Assembly

    Genomic

    1. NC_000007.13 Reference GRCh37.p5 Primary Assembly

      Range
      73442427..73484237
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000139.1 Alternate HuRef

      Range
      69326879..69367012
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CRA_TCAGchr7v2

    Genomic

    1. AC_000068.1 Alternate CRA_TCAGchr7v2

      Range
      72775499..72817309
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Related Sequences

    Nucleotide Protein
    Heading Accession and Version
    genomic AC005056.2 AAS07435.1
    genomic CH471200.2 EAW69624.1
      EAW69625.1
      EAW69626.1
      EAW69627.1
      EAW69628.1
      EAW69629.1
      EAW69630.1
      EAW69631.1
      EAW69632.1
      EAW69633.1
      EAW69634.1
      EAW69635.1
      EAW69636.1
    genomic CQ796435.1 CAG26527.1
    genomic J04821.1 AAA52379.1
    genomic M16983.1 AAC98395.1
    genomic M17265.1 AAC98395.1
    genomic M17266.1 AAC98395.1
    genomic M17267.1 AAC98395.1
    genomic M17268.1 AAC98395.1
    genomic M17269.1 None
    genomic M17270.1 AAC98395.1
    genomic M17271.1 AAC98395.1
    genomic M17272.1 AAC98395.1
    genomic M17273.1 AAC98395.1
    genomic M17274.1 AAC98395.1
    genomic M17275.1 AAC98395.1
    genomic M17276.1 AAC98395.1
    genomic M17277.1 AAC98395.1
    genomic M17278.1 AAC98395.1
    genomic M17279.1 AAC98395.1
    genomic M17280.1 AAC98395.1
    genomic M17281.1 AAC98395.1
    genomic M17282.1 AAC98393.1
      AAC98394.1
      AAC98395.1
    genomic U62292.1 AAB17544.1
    genomic U63721.1 AAC13884.1
    genomic U77846.1 AAC99789.1
    genomic U93037.1 AAB65620.1
      AAB65621.1
    genomic X15603.1 CAA33627.1
    mRNA AB208942.1 BAD92179.1
    mRNA AF086171.1 None
    mRNA AK075494.1 BAC11651.1
    mRNA AK075554.1 BAC11696.1
    mRNA AK092232.1 BAG52500.1
    mRNA AK094138.1 BAG52824.1
    mRNA AK095990.1 BAG53188.1
    mRNA AK122731.1 BAC85506.1
    mRNA AK125511.1 BAC86188.1
    mRNA AK130894.1 None
    mRNA AK225659.1 None
    mRNA AK304845.1 BAG65586.1
    mRNA BC035570.1 None
    mRNA BC050379.1 None
    mRNA BC065566.1 AAH65566.1
    mRNA BP284909.1 None
    mRNA BX537939.1 CAD97910.1
    mRNA BX538199.1 CAD98065.1
    mRNA M24782.1 AAA53190.1
    mRNA M26867.1 None
    mRNA M36860.1 AAA52382.1
    mRNA X52896.1 None
    other-genetic AM393341.1 CAL38219.1
    Protein Accession Links
    GenPept Link UniProtKB Link
    P15502.3 GenPept UniProtKB/Swiss-Prot:P15502
    Q59H17 GenPept UniProtKB/TrEMBL:Q59H17
    Q6ZUN2 GenPept UniProtKB/TrEMBL:Q6ZUN2
    Q8N2G0 GenPept UniProtKB/TrEMBL:Q8N2G0
    Q8NBI4 GenPept UniProtKB/TrEMBL:Q8NBI4
    Q9UME9 GenPept UniProtKB/TrEMBL:Q9UME9
    Q9UMK5 GenPept UniProtKB/TrEMBL:Q9UMK5

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