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Rps15 ribosomal protein S15 [ Mus musculus (house mouse) ]

Gene ID: 20054, updated on 28-May-2016
Official Symbol
Rps15provided by MGI
Official Full Name
ribosomal protein S15provided by MGI
Primary source
MGI:MGI:98117
See related
Ensembl:ENSMUSG00000063457 Vega:OTTMUSG00000000015
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
rig
Orthologs
Location:
10; 10 C1
Exon count:
5
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 10 NC_000076.6 (80292431..80294114)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (79755176..79756859)

Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene guanidinoacetate methyltransferase Neighboring gene DAZ associated protein 1 Neighboring gene microRNA 6911 Neighboring gene predicted gene, 30682 Neighboring gene adenomatosis polyposis coli 2 Neighboring gene RIKEN cDNA 2310011J03 gene Neighboring gene proprotein convertase subtilisin/kexin type 4

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
 
structural constituent of ribosome ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
osteoblast differentiation ISO
Inferred from Sequence Orthology
more info
 
rRNA processing ISO
Inferred from Sequence Orthology
more info
 
ribosomal small subunit assembly IBA
Inferred from Biological aspect of Ancestor
more info
 
ribosomal small subunit assembly ISO
Inferred from Sequence Orthology
more info
 
ribosomal small subunit biogenesis ISO
Inferred from Sequence Orthology
more info
 
ribosomal small subunit export from nucleus ISO
Inferred from Sequence Orthology
more info
 
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
 
cytosolic small ribosomal subunit ISO
Inferred from Sequence Orthology
more info
 
focal adhesion ISO
Inferred from Sequence Orthology
more info
 
intracellular ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
ribosome IEA
Inferred from Electronic Annotation
more info
 
small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001310726.1NP_001297655.1  40S ribosomal protein S15 isoform 2

    See identical proteins and their annotated locations for NP_001297655.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate exon in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    AC140229
    Consensus CDS
    CCDS78858.1
    UniProtKB/TrEMBL
    D3YTQ9
    Conserved Domains (1) summary
    cl00350
    Location:1116
    Ribosomal_S19; Ribosomal protein S19
  2. NM_009091.2NP_033117.1  40S ribosomal protein S15 isoform 1

    See identical proteins and their annotated locations for NP_033117.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AA027738, AV569793
    Consensus CDS
    CCDS35978.1
    UniProtKB/Swiss-Prot
    P62843
    Related
    ENSMUSP00000069004, OTTMUSP00000020607, ENSMUST00000068408, OTTMUST00000045767
    Conserved Domains (1) summary
    PTZ00096
    Location:1143
    PTZ00096; 40S ribosomal protein S15; Provisional

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000076.6 Reference GRCm38.p3 C57BL/6J

    Range
    80292431..80294114
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006513390.2XP_006513453.1  

    Related
    ENSMUSP00000100997, OTTMUSP00000020608, ENSMUST00000062674, OTTMUST00000045768
    Conserved Domains (1) summary
    cl00350
    Location:1116
    Ribosomal_S19; Ribosomal protein S19

Alternate Mm_Celera

Genomic

  1. AC_000032.1 Alternate Mm_Celera

    Range
    81307304..81308987
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)