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    ELK1 ELK1, member of ETS oncogene family [ Homo sapiens (human) ]

    Gene ID: 2002, updated on 18-May-2013
    Official Symbol
    ELK1provided by HGNC
    Official Full Name
    ELK1, member of ETS oncogene familyprovided by HGNC
    Primary source
    HGNC:3321
    See related
    Ensembl:ENSG00000126767; HPRD:02407; MIM:311040; Vega:OTTHUMG00000021452
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This gene is a member of the Ets family of transcription factors and of the ternary complex factor (TCF) subfamily. Proteins of the TCF subfamily form a ternary complex by binding to the the serum response factor and the serum response element in the promoter of the c-fos proto-oncogene. The protein encoded by this gene is a nuclear target for the ras-raf-MAPK signaling cascade. This gene produces multiple isoforms by using alternative translational start codons and by alternative splicing. Related pseudogenes have been identified on chromosomes 7 and 14. [provided by RefSeq, Mar 2012]
    Location :
    Xp11.2
    Sequence :
    Chromosome: X; NC_000023.10 (47494919..47510003, complement)
    See ELK1 in Epigenomics, MapViewer

    Chromosome X - NC_000023.10Genomic Context describing neighboring genes Neighboring gene synapsin I Neighboring gene microRNA 4769 Neighboring gene complement factor properdin Neighboring gene uncharacterized LOC100133957 Neighboring gene ubiquitously-expressed, prefoldin-like chaperone Neighboring gene spermine synthase pseudogene Neighboring gene CXXC finger protein 1 pseudogene 1

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Protein Gene Interaction Pubs
    Nef, p27 nef Nef increases Elk1 phosphorylation via the activation of the ERK1/2 signaling pathway in primary CD4 T cells PubMed

    Go to the HIV-1, Human Protein Interaction Database

    Products Interactant Other Gene Complex Source Pubs Description
    NP_005220.1 NC_000011.8 FOSL1    BIND  PubMed Elk1 interacts with the region of the FRA-1 promoter containing the SRE and ATF sites. 
    NP_005220.1 MAPK1    BIND  PubMed Mapk1 (p42Mapk) phosphorylates Elk1 at Ser383. 
    NP_005220.1 NP_002742.3 MAPK11    BIND  PubMed p38-2 interacts with and phosphorylates Elk1. 
    NP_005220.1 MAPK14    BIND  PubMed Elk-1 is phosphorylated by an unspecified isoform of p38 MAPK. This interaction was modeled on a demonstrated interaction between human Elk-1 and p38 MAPK from an unspecified species. 
    NP_005220.1 MAPK14    BIND  PubMed An unspecified isoform of p38 interacts with and phosphorylates Elk-1. 
    NP_005220.1 NP_002737.1 MAPK3    BIND  PubMed Mapk3 (p44Mapk) phosphorylates Elk1 at Ser383. 
    NP_005220.1 NP_002737.1 MAPK3    BIND  PubMed Elk-1 is phosphorylated by ERK-1. This interaction was modeled on a demonstrated interaction between human Elk-1 and ERK-1 from an unspecified species. 
    NP_005220.1 NP_002737.1 MAPK3    BIND  PubMed Elk-1 is phosphorylated by ERK-1. This interaction was modeled on a demonstrated interaction between human Elk-1 and ERK-1 from an unspecified species. 
    NP_005220.1 NP_002737.1 MAPK3    BIND  PubMed ERK1 interacts with and phosphorylates Elk-1. 
    NP_005220.1 NP_002737.1 MAPK3    BIND  PubMed Erk1 phosphorylates Elk-1. This interaction was modeled on a demonstrated interaction between Erk1 and Elk-1 from an unspecified species. 
    NP_005220.1 NP_002737.1 MAPK3    BIND  PubMed ERK1 interacts with and phosphorylates Elk1. This interaction was modelled on a demonstrated interaction between rat ERK1 and human Elk1. 
    NP_005220.1 MAPK8    BIND  PubMed Elk-1 is phosphorylated by JNK-1. This interaction was modeled on a demonstrated interaction between human Elk-1 and JNK-1 from an unspecified species. 
    NP_005220.1 MAPK8    BIND  PubMed An unspecified isoform of JNK1 interacts with and phosphorylates Elk1. 
    NP_005220.1 MAPK9    BIND  PubMed An unspecified isoform of JNK2 interacts with and phosphorylates Elk-1. 
    NP_005220.1 NP_775298.1 PIAS2    BIND  PubMed ELK1 interacts with PIAS2a (PIASX-alpha). 
    P19419 P38398 BRCA1    HPRD  PubMed  
    P19419 P17676 CEBPB    HPRD  PubMed  
    P19419 Q92793 CREBBP    HPRD  PubMed  
    P19419 Q09472 EP300    HPRD  PubMed  
    P19419 P01100 FOS    HPRD  PubMed  
    P19419 Q13322 GRB10    HPRD  PubMed  
    P19419 P62993 GRB2    HPRD  PubMed  
    P19419 P41134 ID1    HPRD  PubMed  
    P19419 Q02363 ID2    HPRD  PubMed  
    P19419 Q02535 ID3    HPRD  PubMed  
    P19419 O43474 KLF4    HPRD  PubMed  
    P19419 Q02750 MAP2K1    HPRD  PubMed  
    P19419 P46734 MAP2K3    HPRD  PubMed  
    P19419 P28482 MAPK1    HPRD  PubMed  
    P19419 Q15759 MAPK11    HPRD  PubMed  
    P19419 Q16539 MAPK14    HPRD  PubMed  
    P19419 P27361 MAPK3    HPRD  PubMed  
    P19419 P45983 MAPK8    HPRD  PubMed  
    P19419 P45984 MAPK9    HPRD  PubMed  
    P19419 Q9Y3A3 MOB4    HPRD  PubMed  
    P19419 O75928 PIAS2    HPRD  PubMed  
    P19419 P37840 SNCA    HPRD  PubMed  
    P19419 P11831 SRF    HPRD  PubMed  
    P19419 O75716 STK16    HPRD  PubMed  
    P19419 Q9UL54 TAOK2    HPRD  PubMed  
    P19419 P63279 UBE2I    HPRD  PubMed  
    BioGRID:108317 BioGRID:106848 APP    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108317 BioGRID:107456 CDK6    BioGRID  PubMed Biochemical Activity 
    BioGRID:108317 BioGRID:108309 ELAVL1    BioGRID  PubMed Affinity Capture-RNA 
    BioGRID:108317 BioGRID:108331 EMX1    BioGRID  PubMed Two-hybrid 
    BioGRID:108317 BioGRID:108347 EP300    BioGRID  PubMed Affinity Capture-Western; Phenotypic Enhancement; Reconstituted Complex 
    BioGRID:108317 BioGRID:108431 EWSR1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108317 BioGRID:108602 FLI1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108317 BioGRID:109315 HDAC1    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108317 BioGRID:115744 HOXB13    BioGRID  PubMed Two-hybrid 
    BioGRID:108317 BioGRID:114726 KLF4    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108317 BioGRID:201048 Ksr1    BioGRID  PubMed Biochemical Activity 
    BioGRID:108317 BioGRID:115722 MAD2L2    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity; Reconstituted Complex; Two-hybrid 
    BioGRID:108317 BioGRID:111580 MAPK1    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity; Reconstituted Complex 
    BioGRID:108317 BioGRID:111588 MAPK10    BioGRID  PubMed Biochemical Activity 
    BioGRID:108317 BioGRID:111581 MAPK3    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity 
    BioGRID:108317 BioGRID:111585 MAPK8    BioGRID  PubMed Biochemical Activity; Two-hybrid 
    BioGRID:108317 BioGRID:111587 MAPK9    BioGRID  PubMed Biochemical Activity; Two-hybrid 
    BioGRID:108317 BioGRID:117111 PADI4    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108317 BioGRID:112506 SNCA    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108317 BioGRID:112600 SRF    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108317 BioGRID:123815 STARD3NL    BioGRID  PubMed Two-hybrid 
    BioGRID:108317 BioGRID:114144 STK16    BioGRID  PubMed Biochemical Activity 
    BioGRID:108317 BioGRID:113188 SUMO1    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:108317 BioGRID:203256 Sin3a    BioGRID  PubMed Reconstituted Complex 
    BioGRID:108317 BioGRID:113177 UBE2I    BioGRID  PubMed Affinity Capture-Western; Biochemical Activity; Reconstituted Complex 
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    • Trk receptor signaling mediated by the MAPK pathway, organism-specific biosystem (from Pathway Interaction Database)
      Trk receptor signaling mediated by the MAPK pathway, organism-specific biosystem
      Trk receptor signaling mediated by the MAPK pathway
    • p38 MAPK Signaling Pathway, organism-specific biosystem (from WikiPathways)
      p38 MAPK Signaling Pathway, organism-specific biosystemp38 MAPKs are members of the MAPK family that are activated by a variety of environmental stresses and inflammatory cytokines. Stress signals are delivered to this cascade by members of small GTPases...

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    MyD88-dependent toll-like receptor signaling pathway TAS
    Traceable Author Statement
    more info
     
    MyD88-independent toll-like receptor signaling pathway TAS
    Traceable Author Statement
    more info
     
    TRIF-dependent toll-like receptor signaling pathway TAS
    Traceable Author Statement
    more info
     
    innate immune response TAS
    Traceable Author Statement
    more info
     
    neurotrophin TRK receptor signaling pathway TAS
    Traceable Author Statement
    more info
     
    positive regulation of transcription from RNA polymerase II promoter IDA
    Inferred from Direct Assay
    more info
    PubMed 
    positive regulation of transcription from RNA polymerase II promoter IMP
    Inferred from Mutant Phenotype
    more info
     
    positive regulation of transcription, DNA-dependent IDA
    Inferred from Direct Assay
    more info
    PubMed 
    stress-activated MAPK cascade TAS
    Traceable Author Statement
    more info
     
    toll-like receptor 10 signaling pathway TAS
    Traceable Author Statement
    more info
     
    toll-like receptor 2 signaling pathway TAS
    Traceable Author Statement
    more info
     
    toll-like receptor 3 signaling pathway TAS
    Traceable Author Statement
    more info
     
    toll-like receptor 4 signaling pathway TAS
    Traceable Author Statement
    more info
     
    toll-like receptor 5 signaling pathway TAS
    Traceable Author Statement
    more info
     
    toll-like receptor 9 signaling pathway TAS
    Traceable Author Statement
    more info
     
    toll-like receptor TLR1:TLR2 signaling pathway TAS
    Traceable Author Statement
    more info
     
    toll-like receptor TLR6:TLR2 signaling pathway TAS
    Traceable Author Statement
    more info
     
    toll-like receptor signaling pathway TAS
    Traceable Author Statement
    more info
     
    transcription, DNA-dependent IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IC
    Inferred by Curator
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
     
    Preferred Names
    ETS domain-containing protein Elk-1
    Names
    ETS domain-containing protein Elk-1
    ETS-like gene 1
    tyrosine kinase (ELK1) oncogene

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_009222.1 RefSeqGene

      Range
      5001..20085
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001114123.2NP_001107595.1  ETS domain-containing protein Elk-1 isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1, also known as 5'UTR long or 5'UTRL) represents the longest transcript and encodes the longer isoform (a). Both variants 1 and 2 encode isoform a. Delayed translational reinitiation from an alternative downstream start codon, AUG sElk-1, can also result in a shorter isoform (sELK-1), as described in PMID:22354998.
      Source sequence(s)
      BC056150, BQ448492, CB852603, M25269
      Consensus CDS
      CCDS14283.1
      UniProtKB/Swiss-Prot
      P19419
      Conserved Domains (1) summary
      pfam00178
      Location:588
      Blast Score: 467
      Ets; Ets-domain
    2. NM_001257168.1NP_001244097.1  ETS domain-containing protein Elk-1 isoform b

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) uses two alternate splice sites and lacks an alternate exon which results in a frameshift in the central and 3' coding regions, compared to variant 1. The encoded isoform (b) has a distinct C-terminus and is shorter than isoform a.
      Source sequence(s)
      AF000672, BC056150, BQ448492, CB852603
      Consensus CDS
      CCDS59165.1
      UniProtKB/Swiss-Prot
      P19419
      Conserved Domains (1) summary
      pfam00178
      Location:588
      Blast Score: 397
      Ets; Ets-domain
    3. NM_005229.4NP_005220.2  ETS domain-containing protein Elk-1 isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2, also known as 5'UTR short or 5'UTRS) lacks an alternate exon in the 5' UTR, compared to variant 1. Both variants 1 and 2 encode isoform a. Delayed translational reinitiation from an alternative downstream start codon, AUG sElk-1, can also result in a shorter isoform (sELK-1), as described in PMID:22354998.
      Source sequence(s)
      BC048296, BC056150, BQ448492, CB852603
      Consensus CDS
      CCDS14283.1
      UniProtKB/Swiss-Prot
      P19419
      UniProtKB/TrEMBL
      Q86SR6
      Related
      ENSP00000247161, OTTHUMP00000023224, ENST00000247161, OTTHUMT00000056436
      Conserved Domains (1) summary
      pfam00178
      Location:588
      Blast Score: 467
      Ets; Ets-domain

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000023.10 Reference GRCh37.p10 Primary Assembly

      Range
      47494919..47510003, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000155.1 Alternate HuRef

      Range
      45207767..45222756, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018934.1 Alternate CHM1_1.0

      Range
      47414487..47429516, complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

      Supplemental Content

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