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Rlbp1 retinaldehyde binding protein 1 [ Mus musculus (house mouse) ]

Gene ID: 19771, updated on 28-May-2016
Official Symbol
Rlbp1provided by MGI
Official Full Name
retinaldehyde binding protein 1provided by MGI
Primary source
MGI:MGI:97930
See related
Ensembl:ENSMUSG00000039194 Vega:OTTMUSG00000058562
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CRALBP; 3110056M11Rik
Orthologs
Location:
7 D3; 7 45.0 cM
Exon count:
10
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 7 NC_000073.6 (79374865..79387043, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (86519756..86531913, complement)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene abhydrolase domain containing 2 Neighboring gene predicted gene, 39041 Neighboring gene predicted gene, 31446 Neighboring gene predicted gene, 31653 Neighboring gene Fanconi anemia, complementation group I Neighboring gene predicted gene 16017

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
11-cis retinal binding IDA
Inferred from Direct Assay
more info
PubMed 
retinal binding IEA
Inferred from Electronic Annotation
more info
 
retinol binding IEA
Inferred from Electronic Annotation
more info
 
transporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
response to stimulus IEA
Inferred from Electronic Annotation
more info
 
transport IEA
Inferred from Electronic Annotation
more info
 
visual perception IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cell body ISO
Inferred from Sequence Orthology
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
intracellular IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
retinaldehyde-binding protein 1
Names
cellular retinaldehyde-binding protein

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001173483.1NP_001166954.1  retinaldehyde-binding protein 1

    See identical proteins and their annotated locations for NP_001166954.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site, compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK140622, CO040983
    Consensus CDS
    CCDS39990.1
    UniProtKB/Swiss-Prot
    Q9Z275
    UniProtKB/TrEMBL
    Q544Y3
    Related
    ENSMUSP00000137143, OTTMUSP00000074947, ENSMUST00000179243, OTTMUST00000143796
    Conserved Domains (2) summary
    smart01100
    Location:60117
    CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
    cd00170
    Location:146292
    SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
  2. NM_020599.2NP_065624.1  retinaldehyde-binding protein 1

    See identical proteins and their annotated locations for NP_065624.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK014227, AK140622
    Consensus CDS
    CCDS39990.1
    UniProtKB/Swiss-Prot
    Q9Z275
    UniProtKB/TrEMBL
    Q544Y3
    Related
    ENSMUSP00000054545, OTTMUSP00000074948, ENSMUST00000053718, OTTMUST00000143797
    Conserved Domains (2) summary
    smart01100
    Location:60117
    CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
    cd00170
    Location:146292
    SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000073.6 Reference GRCm38.p3 C57BL/6J

    Range
    79374865..79387043 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011250827.1XP_011249129.1  

    Conserved Domains (2) summary
    smart01100
    Location:60117
    CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
    cd00170
    Location:146277
    SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
  2. XM_011250826.1XP_011249128.1  

    See identical proteins and their annotated locations for XP_011249128.1

    UniProtKB/Swiss-Prot
    Q9Z275
    UniProtKB/TrEMBL
    Q544Y3
    Conserved Domains (2) summary
    smart01100
    Location:60117
    CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
    cd00170
    Location:146292
    SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
  3. XM_006540718.1XP_006540781.1  

    See identical proteins and their annotated locations for XP_006540781.1

    UniProtKB/Swiss-Prot
    Q9Z275
    UniProtKB/TrEMBL
    Q544Y3
    Conserved Domains (2) summary
    smart01100
    Location:60117
    CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
    cd00170
    Location:146292
    SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...
  4. XM_006540717.1XP_006540780.1  

    See identical proteins and their annotated locations for XP_006540780.1

    UniProtKB/Swiss-Prot
    Q9Z275
    UniProtKB/TrEMBL
    Q544Y3
    Related
    ENSMUSP00000146196, OTTMUSP00000074949, ENSMUST00000206162, OTTMUST00000143799
    Conserved Domains (2) summary
    smart01100
    Location:60117
    CRAL_TRIO_N; CRAL/TRIO, N-terminal domain
    cd00170
    Location:146292
    SEC14; Sec14p-like lipid-binding domain. Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to ...

Alternate Mm_Celera

Genomic

  1. AC_000029.1 Alternate Mm_Celera

    Range
    76771983..76784152 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)