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Rab4a RAB4A, member RAS oncogene family [ Mus musculus (house mouse) ]

Gene ID: 19341, updated on 8-May-2016
Official Symbol
Rab4aprovided by MGI
Official Full Name
RAB4A, member RAS oncogene familyprovided by MGI
Primary source
MGI:MGI:105069
See related
Ensembl:ENSMUSG00000019478 Vega:OTTMUSG00000030744
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rab4; AI848268
Orthologs
Location:
8 E2; 8 72.19 cM
Exon count:
8
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 8 NC_000074.6 (123805847..123835291)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 8 NC_000074.5 (126329896..126359191)

Chromosome 8 - NC_000074.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4732419C18 gene Neighboring gene predicted gene, 36188 Neighboring gene predicted gene, 39279 Neighboring gene centriole, cilia and spindle associated protein Neighboring gene predicted gene 4342 Neighboring gene predicted gene 9901

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
ATPase activator activity ISO
Inferred from Sequence Orthology
more info
 
ATPase binding ISO
Inferred from Sequence Orthology
more info
 
GDP binding ISO
Inferred from Sequence Orthology
more info
 
GTP binding ISO
Inferred from Sequence Orthology
more info
 
GTPase activity ISO
Inferred from Sequence Orthology
more info
 
ionotropic glutamate receptor binding ISO
Inferred from Sequence Orthology
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein transporter activity IDA
Inferred from Direct Assay
more info
PubMed 
syntaxin binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
Rab protein signal transduction ISO
Inferred from Sequence Orthology
more info
 
antigen processing and presentation ISO
Inferred from Sequence Orthology
more info
 
positive regulation of ATPase activity ISO
Inferred from Sequence Orthology
more info
 
protein transport IDA
Inferred from Direct Assay
more info
PubMed 
regulation of endocytosis IDA
Inferred from Direct Assay
more info
PubMed 
small GTPase mediated signal transduction IEA
Inferred from Electronic Annotation
more info
 
transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytosol ISO
Inferred from Sequence Orthology
more info
 
endosome IDA
Inferred from Direct Assay
more info
PubMed 
extracellular exosome ISO
Inferred from Sequence Orthology
more info
 
insulin-responsive compartment IBA
Inferred from Biological aspect of Ancestor
more info
 
insulin-responsive compartment ISO
Inferred from Sequence Orthology
more info
 
intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
membrane ISO
Inferred from Sequence Orthology
more info
 
perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 
recycling endosome ISO
Inferred from Sequence Orthology
more info
PubMed 
vesicle ISO
Inferred from Sequence Orthology
more info
 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009003.3NP_033029.2  ras-related protein Rab-4A

    See identical proteins and their annotated locations for NP_033029.2

    Status: VALIDATED

    Source sequence(s)
    AK145452, AK161877, BM899696, CO806247
    Consensus CDS
    CCDS52703.1
    UniProtKB/Swiss-Prot
    P56371
    UniProtKB/TrEMBL
    Q3ULK1
    Related
    ENSMUSP00000113886, OTTMUSP00000040010, ENSMUST00000118535, OTTMUST00000076111
    Conserved Domains (2) summary
    cd04113
    Location:14174
    Rab4; Rab GTPase family 4 (Rab4)
    pfam00071
    Location:15176
    Ras; Ras family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000074.6 Reference GRCm38.p3 C57BL/6J

    Range
    123805847..123835291
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006530773.2XP_006530836.1  

    Conserved Domains (1) summary
    cl21455
    Location:569
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

Alternate Mm_Celera

Genomic

  1. AC_000030.1 Alternate Mm_Celera

    Range
    128073037..128102572
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)