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Luc7l2 LUC7-like 2 (S. cerevisiae) [ Mus musculus (house mouse) ]

Gene ID: 192196, updated on 8-May-2016
Official Symbol
Luc7l2provided by MGI
Official Full Name
LUC7-like 2 (S. cerevisiae)provided by MGI
Primary source
MGI:MGI:2183260
See related
Ensembl:ENSMUSG00000029823 Vega:OTTMUSG00000034253
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CGI59; Cgi74; AA522013; AU015269; 4930471C18Rik
Location:
6; 6 B1
Exon count:
17
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 6 NC_000072.6 (38551339..38609471)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (38501444..38559470)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1110001J03 gene Neighboring gene kinesin family member 11 pseudogene Neighboring gene killer cell lectin-like receptor subfamily G, member 2 Neighboring gene C-type lectin domain family 2, member L

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enzyme binding ISO
Inferred from Sequence Orthology
more info
 
mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
mRNA splice site selection IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
U1 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
 
U2-type prespliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
putative RNA-binding protein Luc7-like 2
Names
CGI-74 homolog
CGI-74-like SR-rich

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001170848.1NP_001164319.1  putative RNA-binding protein Luc7-like 2 isoform 2

    See identical proteins and their annotated locations for NP_001164319.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an in-frame exon in the 3' coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    AC124762, AC161147, AK134191
    UniProtKB/TrEMBL
    Q3UZ17
    Conserved Domains (2) summary
    COG5200
    Location:5228
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
    pfam03194
    Location:4239
    LUC7; LUC7 N_terminus
  2. NM_001170849.1NP_001164320.1  putative RNA-binding protein Luc7-like 2 isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 3' UTR and 3' coding region, compared to variant 1. The resulting isoform (3) has a distinct C-terminus and is shorter than isoform 1.
    Source sequence(s)
    AC124762, AC161147, BC056383
    Consensus CDS
    CCDS51751.1
    UniProtKB/Swiss-Prot
    Q7TNC4
    Related
    ENSMUSP00000124010, OTTMUSP00000047177, ENSMUST00000161538, OTTMUST00000087018
    Conserved Domains (2) summary
    COG5200
    Location:5228
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
    pfam03194
    Location:4239
    LUC7; LUC7 N_terminus
  3. NM_001311099.1NP_001298028.1  putative RNA-binding protein Luc7-like 2 isoform 4

    See identical proteins and their annotated locations for NP_001298028.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation at a downstream start codon, compared to variant 1. It encodes isoform 4, which has a shorter N-terminus, compared to isoform 1.
    Source sequence(s)
    AC124762, AK046307, AK134191, AK147889, BC056354, BQ128768
    Consensus CDS
    CCDS80524.1
    UniProtKB/Swiss-Prot
    Q7TNC4
    UniProtKB/TrEMBL
    Q05CX5, Q3UGK2, Q3UZ17
    Conserved Domains (1) summary
    COG5200
    Location:1175
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
  4. NM_001311100.1NP_001298029.1  putative RNA-binding protein Luc7-like 2 isoform 5

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR and 5' coding region, has a distinct 3' terminal exon and intitiates translation at a downstrean start codon, compared to variant 1. It encodes isoform 5, which is shorter and has a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AA125226, AC124762, AK046307, BC056354, BC056383, BC056970, CF951985, CN530762
    Consensus CDS
    CCDS80525.1
    UniProtKB/Swiss-Prot
    Q7TNC4
    UniProtKB/TrEMBL
    E9Q715
    Conserved Domains (1) summary
    COG5200
    Location:1175
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
  5. NM_138680.2NP_619621.2  putative RNA-binding protein Luc7-like 2 isoform 1

    See identical proteins and their annotated locations for NP_619621.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AC124762, AC161147
    Consensus CDS
    CCDS20015.1
    UniProtKB/Swiss-Prot
    Q7TNC4
    Related
    ENSMUSP00000055254, OTTMUSP00000047175, ENSMUST00000057692, OTTMUST00000087016
    Conserved Domains (2) summary
    COG5200
    Location:5228
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
    pfam03194
    Location:4239
    LUC7; LUC7 N_terminus

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p3 C57BL/6J

    Range
    38551339..38609471
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006505753.2XP_006505816.1  

    Related
    ENSMUSP00000125111, OTTMUSP00000047176, ENSMUST00000161227, OTTMUST00000087017
    Conserved Domains (1) summary
    COG5200
    Location:1175
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
  2. XM_006505756.2XP_006505819.1  

    Related
    ENSMUSP00000125394, OTTMUSP00000047178, ENSMUST00000163047, OTTMUST00000087019
    Conserved Domains (1) summary
    COG5200
    Location:1175
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
  3. XM_006505748.2XP_006505811.1  

    Conserved Domains (2) summary
    COG5200
    Location:35244
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
    pfam03194
    Location:24255
    LUC7; LUC7 N_terminus
  4. XM_006505749.2XP_006505812.1  

    See identical proteins and their annotated locations for XP_006505812.1

    Conserved Domains (2) summary
    COG5200
    Location:18227
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
    pfam03194
    Location:7238
    LUC7; LUC7 N_terminus
  5. XM_011241254.1XP_011239556.1  

    Conserved Domains (2) summary
    COG5200
    Location:18227
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
    pfam03194
    Location:7238
    LUC7; LUC7 N_terminus
  6. XM_006505751.2XP_006505814.1  

    Conserved Domains (2) summary
    COG5200
    Location:14225
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
    pfam03194
    Location:14236
    LUC7; LUC7 N_terminus
  7. XM_006505747.2XP_006505810.1  

    See identical proteins and their annotated locations for XP_006505810.1

    Conserved Domains (2) summary
    COG5200
    Location:35244
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
    pfam03194
    Location:24255
    LUC7; LUC7 N_terminus
  8. XM_006505750.2XP_006505813.1  

    See identical proteins and their annotated locations for XP_006505813.1

    Conserved Domains (2) summary
    COG5200
    Location:18227
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
    pfam03194
    Location:7238
    LUC7; LUC7 N_terminus
  9. XM_011241255.1XP_011239557.1  

    See identical proteins and their annotated locations for XP_011239557.1

    Conserved Domains (1) summary
    COG5200
    Location:1175
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
  10. XM_006505754.2XP_006505817.1  

    See identical proteins and their annotated locations for XP_006505817.1

    UniProtKB/TrEMBL
    Q05CX5
    Conserved Domains (1) summary
    COG5200
    Location:1175
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
  11. XM_006505755.2XP_006505818.1  

    See identical proteins and their annotated locations for XP_006505818.1

    UniProtKB/TrEMBL
    Q05CX5
    Conserved Domains (1) summary
    COG5200
    Location:1175
    LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

Alternate Mm_Celera

Genomic

  1. AC_000028.1 Alternate Mm_Celera

    Range
    38532394..38590424
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)