These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001252452.1 → NP_001239381.1 POU domain, class 5, transcription factor 1 isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region and uses a downstream, in-frame start codon, compared to variant 1. the encoded isoform (2) has a shorter N-terminus, compared to isoform 1.
- Source sequence(s)
-
AB375270, AW536651, BY390845
- Conserved Domains (2) summary
-
- cd00086
Location:93 – 151
Blast Score: 148
- homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
- cl02582
Location:3 – 74
Blast Score: 344
- Pou; Pou domain - N-terminal to homeobox domain
-
NM_013633.3 → NP_038661.2 POU domain, class 5, transcription factor 1 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
AK145321, BY390845, CR974473
- Consensus CDS
-
CCDS37600.1
- UniProtKB/Swiss-Prot
-
P20263
- Related
- ENSMUSP00000025271, OTTMUSP00000053597, ENSMUST00000025271, OTTMUST00000096009
- Conserved Domains (2) summary
-
- cd00086
Location:224 – 282
Blast Score: 155
- homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
- cl02582
Location:131 – 205
Blast Score: 353
- Pou; Pou domain - N-terminal to homeobox domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCm38 129X1/SvJ
Genomic
-
NT_039662.3 Reference GRCm38 129X1/SvJ
- Range
- 1824981..1829725
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCm38 C57BL/6J
Genomic
-
NC_000083.6 Reference GRCm38 C57BL/6J
- Range
- 35506032..35510777
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCm38 NOD/MrkTac
Genomic
-
NT_187027.1 Reference GRCm38 NOD/MrkTac
- Range
- 1819229..1823763
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate Mm_Celera
Genomic
-
AC_000039.1 Alternate Mm_Celera
- Range
- 39020977..39025724
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)