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nhr-238 Nuclear receptor [ Caenorhabditis elegans ]

Gene ID: 189971, updated on 11-Apr-2024

Summary

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Gene symbol
nhr-238
Gene description
Nuclear receptor
Primary source
WormBase:WBGene00021611
Locus tag
CELE_Y46H3D.7
See related
AllianceGenome:WB:WBGene00021611
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: V
Exon count:
5
Sequence:
Chromosome: V; NC_003283.11 (1628105..1629432, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene NR LBD domain-containing protein;Nuclear receptor domain-containing protein Neighboring gene NR LBD domain-containing protein Neighboring gene ShKT domain-containing protein Neighboring gene ncRNA Neighboring gene Receptor L-domain domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Nuclear receptor
NP_503461.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    1628105..1629432 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_071060.5 → NP_503461.1  Nuclear receptor [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_503461.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q966B7
    Conserved Domains (2) summary
    cd06157
    Location:123 → 307
    NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
    smart00399
    Location:8 → 77
    ZnF_C4; c4 zinc finger in nuclear hormone receptors

RNA

  1. NR_132512.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

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