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LOC18428230 homeobox-leucine zipper protein HAT4 [ Amborella trichopoda ]

Gene ID: 18428230, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18428230
Gene description
homeobox-leucine zipper protein HAT4
Locus tag
AMTR_s00111p00077850
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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See LOC18428230 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006497475.1 (857831..863728)

NW_006497475.1Genomic Context describing neighboring genes Neighboring gene ceramide kinase Neighboring gene U-box domain-containing protein 35 Neighboring gene actin-related protein 2/3 complex subunit 5A Neighboring gene uncharacterized LOC18428233

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006497475.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein HAT4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006497475.1 Reference AMTR1.0 Primary Assembly

    Range
    857831..863728
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006837267.3 → XP_006837330.1  homeobox-leucine zipper protein HAT4

    See identical proteins and their annotated locations for XP_006837330.1

    UniProtKB/TrEMBL
    W1NXY0
    Conserved Domains (4) summary
    smart00340
    Location:168 → 210
    HALZ; homeobox associated leucin zipper
    smart00389
    Location:112 → 166
    HOX; Homeodomain
    COG5576
    Location:70 → 211
    COG5576; Homeodomain-containing transcription factor [Transcription]
    pfam04618
    Location:7 → 86
    HD-ZIP_N; HD-ZIP protein N terminus
Nucleotide Protein
Heading Accession and Version

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