Format

Send to:

Choose Destination

Nnat neuronatin [ Mus musculus (house mouse) ]

Gene ID: 18111, updated on 17-May-2016
Official Symbol
Nnatprovided by MGI
Official Full Name
neuronatinprovided by MGI
Primary source
MGI:MGI:104716
See related
Ensembl:ENSMUSG00000067786 Vega:OTTMUSG00000016197
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Peg5; AW107673; 5730414I02Rik
Orthologs
Location:
2 78.4 cM; 2 H1
Exon count:
4
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 2 NC_000068.7 (157560078..157562525)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (157385846..157388258)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene mannosidase, beta A, lysosomal-like Neighboring gene predicted gene, 39975 Neighboring gene Rous sarcoma oncogene Neighboring gene bladder cancer associated protein Neighboring gene pluripotency associated transcript 27 Neighboring gene predicted gene, 34293

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
brain development IBA
Inferred from Biological aspect of Ancestor
more info
 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
positive regulation of insulin secretion IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of protein localization IMP
Inferred from Mutant Phenotype
more info
PubMed 
response to glucose IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001291128.1NP_001278057.1  neuronatin isoform c

    See identical proteins and their annotated locations for NP_001278057.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents the longest transcript and encodes the longest isoform (c).
    Source sequence(s)
    AK160626, AL672259, BQ030646, BU705167, DN176829
    Consensus CDS
    CCDS71174.1
    UniProtKB/Swiss-Prot
    Q61979
    UniProtKB/TrEMBL
    G3X9K1
    Related
    ENSMUSP00000085836, OTTMUSP00000051309, ENSMUST00000088484, OTTMUST00000092720
  2. NM_001291129.1NP_001278058.1  neuronatin isoform d

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks an alternate exon but contains a different in-frame exon in the central coding region, compared to variant 3. The encoded isoform (d) is shorter than isoform c.
    Source sequence(s)
    AK160626, AL672259, BQ030646, BU705167, DV062509
    Consensus CDS
    CCDS71175.1
    UniProtKB/Swiss-Prot
    Q61979
    UniProtKB/TrEMBL
    G3UWR7
    Related
    ENSMUSP00000133397, OTTMUSP00000053178, ENSMUST00000173595, OTTMUST00000095305
  3. NM_001291130.1NP_001278059.1  neuronatin isoform e

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks an alternate exon but contains a different exon that results in a frameshift in the 3' coding region, compared to variant 3. The encoded isoform (e) has a distinct C-terminus and is shorter than isoform c.
    Source sequence(s)
    AK160626, AL672259, BQ030646, BU705167
    Consensus CDS
    CCDS79857.1
    UniProtKB/Swiss-Prot
    Q61979
    UniProtKB/TrEMBL
    G3UWR4
    Related
    ENSMUSP00000133394, OTTMUSP00000053179, ENSMUST00000173839, OTTMUST00000095306
  4. NM_010923.3NP_035053.1  neuronatin isoform alpha

    See identical proteins and their annotated locations for NP_035053.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) lacks an alternate exon but contains a different exon that results in a frameshift in the 3' coding region, compared to variant 3. The encoded isoform (alpha, also known as Neuronatin-3) has a distinct C-terminus and is shorter than isoform c.
    Source sequence(s)
    AK160626, AL672259, BQ030646, BU705167
    Consensus CDS
    CCDS38306.1
    UniProtKB/Swiss-Prot
    Q61979
    Related
    ENSMUSP00000105152, OTTMUSP00000017341, ENSMUST00000109526, OTTMUST00000038785
  5. NM_180960.3NP_851291.1  neuronatin isoform beta

    See identical proteins and their annotated locations for NP_851291.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate exon that results in a frameshift in the 3' coding region, compared to variant 3. The encoded isoform (beta, also known as Neuronatin-2) has a distinct C-terminus and is shorter than isoform c.
    Source sequence(s)
    AK160626, AL672259, AU079843, BQ030646, BU705167
    Consensus CDS
    CCDS38307.1
    UniProtKB/Swiss-Prot
    Q61979
    UniProtKB/TrEMBL
    Q548P9
    Related
    ENSMUSP00000129821, OTTMUSP00000051308, ENSMUST00000153739, OTTMUST00000038786

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p3 C57BL/6J

    Range
    157560078..157562525
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006498901.2XP_006498964.1  

Alternate Mm_Celera

Genomic

  1. AC_000024.1 Alternate Mm_Celera

    Range
    163504125..163506572
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)