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LOC18101280 protein FAR1-RELATED SEQUENCE 3 [ Populus trichocarpa (black cottonwood) ]

Gene ID: 18101280, updated on 23-Nov-2023

Summary

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Gene symbol
LOC18101280
Gene description
protein FAR1-RELATED SEQUENCE 3
Locus tag
POPTR_008G011800v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Populus trichocarpa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Genomic context

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Location:
chromosome: 8
Exon count:
6
Annotation release Status Assembly Chr Location
102 current P.trichocarpa_v4.1 (GCF_000002775.5) 8 NC_037292.2 (594302..600170, complement)
101 previous assembly Pop_tri_v3 (GCF_000002775.4) 8 NC_037292.1 (651593..657968, complement)

Chromosome 8 - NC_037292.2Genomic Context describing neighboring genes Neighboring gene calcium and calcium/calmodulin-dependent serine/threonine-protein kinase-like Neighboring gene uncharacterized LOC112328478 Neighboring gene ethylene-responsive transcription factor WRI1 Neighboring gene uncharacterized LOC7490869

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein FAR1-RELATED SEQUENCE 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Populus trichocarpa Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.trichocarpa_v4.1 Primary Assembly

Genomic

  1. NC_037292.2 Reference P.trichocarpa_v4.1 Primary Assembly

    Range
    594302..600170 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024607384.2 → XP_024463152.1  protein FAR1-RELATED SEQUENCE 3 isoform X2

    UniProtKB/TrEMBL
    A0A3N7FD82
    Conserved Domains (1) summary
    cl28060
    Location:51 → 709
    FAR1; FAR1 DNA-binding domain

  2. XM_006379364.3 → XP_006379426.2  protein FAR1-RELATED SEQUENCE 3 isoform X1

    UniProtKB/TrEMBL
    A0A2K1Z9V4, A0A3N7FD82
    Conserved Domains (1) summary
    cl28060
    Location:51 → 709
    FAR1; FAR1 DNA-binding domain

  3. XM_006379363.3 → XP_006379425.2  protein FAR1-RELATED SEQUENCE 3 isoform X1

    UniProtKB/TrEMBL
    A0A2K1Z9V4, A0A3N7FD82
    Conserved Domains (1) summary
    cl28060
    Location:51 → 709
    FAR1; FAR1 DNA-binding domain
Nucleotide Protein
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