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LOC18034241 ubiquitin carboxyl-terminal hydrolase 2 [ Citrus x clementina ]

Gene ID: 18034241, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18034241
Gene description
ubiquitin carboxyl-terminal hydrolase 2
Locus tag
CICLE_v10028809mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Citrus x clementina
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Genomic context

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Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Citrus_clementina_v1.0 (GCF_000493195.1) Unplaced Scaffold NW_006262022.1 (16456136..16459538, complement)

NW_006262022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18034152 Neighboring gene alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 Neighboring gene pentatricopeptide repeat-containing protein At4g38150-like Neighboring gene DEAD-box ATP-dependent RNA helicase 3, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006262022 Unplaced Scaffold Reference Citrus_clementina_v1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Citrus clementina Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Citrus_clementina_v1.0

Genomic

  1. NW_006262022.1 Reference Citrus_clementina_v1.0

    Range
    16456136..16459538 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024179422.1 → XP_024035190.1  ubiquitin carboxyl-terminal hydrolase 2 isoform X1

    Conserved Domains (1) summary
    cd09617
    Location:57 → 267
    Peptidase_C12_UCH37_BAP1; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1

  2. XM_006423871.2 → XP_006423934.1  ubiquitin carboxyl-terminal hydrolase 2 isoform X2

    See identical proteins and their annotated locations for XP_006423934.1

    UniProtKB/TrEMBL
    V4UD10
    Conserved Domains (1) summary
    cd09617
    Location:3 → 220
    Peptidase_C12_UCH37_BAP1; Cysteine peptidase C12 containing ubiquitin carboxyl-terminal hydrolase (UCH) families UCH37 (UCH-L5) and BAP1
Nucleotide Protein
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