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LOC18030332 alpha-amylase 1 [ Eutrema salsugineum ]

Gene ID: 18030332, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18030332
Gene description
alpha-amylase 1
Locus tag
EUTSA_v10025232mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256909.1 (6406403..6408183)

NW_006256909.1Genomic Context describing neighboring genes Neighboring gene bidirectional sugar transporter SWEET14 Neighboring gene putative F-box/LRR-repeat protein At5g25860 Neighboring gene membrane-anchored ubiquitin-fold protein 3 Neighboring gene S-protein homolog 20

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256909 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-amylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-amylase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256909.1 Reference Eutsalg1_0

    Range
    6406403..6408183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006413293.2 → XP_006413356.1  alpha-amylase 1

    See identical proteins and their annotated locations for XP_006413356.1

    UniProtKB/TrEMBL
    V4MEA3
    Conserved Domains (3) summary
    smart00810
    Location:368 → 428
    Alpha-amyl_C2; Alpha-amylase C-terminal beta-sheet domain
    PLN00196
    Location:29 → 428
    PLN00196; alpha-amylase; Provisional
    cd11314
    Location:30 → 378
    AmyAc_arch_bac_plant_AmyA; Alpha amylase catalytic domain found in archaeal, bacterial, and plant Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases