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LOC18018260 developmental protein SEPALLATA 1 [ Eutrema salsugineum ]

Gene ID: 18018260, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18018260
Gene description
developmental protein SEPALLATA 1
Locus tag
EUTSA_v10014493mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256829.1 (5249063..5251833, complement)

NW_006256829.1Genomic Context describing neighboring genes Neighboring gene extensin Neighboring gene E3 ubiquitin-protein ligase At3g02290 Neighboring gene uncharacterized LOC18018261 Neighboring gene transfer RNA isoleucine (anticodon AAU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256829 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
developmental protein SEPALLATA 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256829.1 Reference Eutsalg1_0

    Range
    5249063..5251833 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006400041.2 → XP_006400104.1  developmental protein SEPALLATA 1

    See identical proteins and their annotated locations for XP_006400104.1

    UniProtKB/TrEMBL
    V4LGN9
    Conserved Domains (2) summary
    cd00265
    Location:2 → 77
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:84 → 171
    K-box; K-box region
Nucleotide Protein
Heading Accession and Version

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