These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
mRNA and Protein(s)
-
NM_001163480.1 → NP_001156952.1 neuralized-like protein 1A isoform 2
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AC132288, BC058386, BC099702
- Consensus CDS
-
CCDS50463.1
- UniProtKB/TrEMBL
-
Q499W5
- UniProtKB/Swiss-Prot
-
Q923S6
- Related
- ENSMUSP00000107438, ENSMUST00000111807
- Conserved Domains (3) summary
-
- cd00162
Location:503 – 547
Blast Score: 99
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
- cl02685
Location:44 – 166
Blast Score: 437
- Neuralized; Neuralized
- pfam13923
Location:501 – 545
Blast Score: 107
- zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)
-
NM_021360.4 → NP_067335.4 neuralized-like protein 1A isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
- Source sequence(s)
-
BC058386, BC099702
- Consensus CDS
-
CCDS29890.1
- UniProtKB/TrEMBL
-
Q499W5
- UniProtKB/Swiss-Prot
-
Q923S6
- Related
- ENSMUSP00000107439, ENSMUST00000111808
- Conserved Domains (3) summary
-
- cd00162
Location:520 – 564
Blast Score: 100
- RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
- cl02685
Location:61 – 183
Blast Score: 436
- Neuralized; Neuralized
- pfam13923
Location:518 – 562
Blast Score: 108
- zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCm38 C57BL/6J
Genomic
-
NC_000085.6 Reference GRCm38 C57BL/6J
- Range
- 47178820..47259441
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate Mm_Celera
Genomic
-
AC_000041.1 Alternate Mm_Celera
- Range
- 47936911..48016141
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)