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E02A10.3 EF-hand domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 179722, updated on 11-Apr-2024

Summary

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Gene symbol
E02A10.3
Gene description
EF-hand domain-containing protein
Primary source
WormBase:WBGene00008453
Locus tag
CELE_E02A10.3
See related
AllianceGenome:WB:WBGene00008453
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable calcium ion binding activity. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: V
Exon count:
10
Sequence:
Chromosome: V; NC_003283.11 (12579599..12588004)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Phosphate carrier protein, mitochondrial Neighboring gene Transthyretin-like family protein Neighboring gene ERAP1_C domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables calcium ion binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables microtubule binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in microtubule cytoskeleton organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in microtubule organizing center IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
EF-hand domain-containing protein
NP_001256433.1
  • Confirmed by transcript evidence
NP_001256434.1
  • Confirmed by transcript evidence
NP_001256435.1
  • Confirmed by transcript evidence
NP_001343832.1
  • Confirmed by transcript evidence
NP_001343833.1
  • Confirmed by transcript evidence
NP_001343834.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    12579599..12588004
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001356744.3 → NP_001343832.1  EF-hand domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A2C9C3L3
    Conserved Domains (2) summary
    cd15897
    Location:140 → 167
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:132 → 273
    EFh_PEF; The penta-EF hand (PEF) family

  2. NM_001356745.2 → NP_001343833.1  EF-hand domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A2C9C2Z8
    Conserved Domains (2) summary
    cd15897
    Location:41 → 68
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:33 → 174
    EFh_PEF; The penta-EF hand (PEF) family

  3. NM_001269504.3 → NP_001256433.1  EF-hand domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256433.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2L2E7
    Conserved Domains (2) summary
    PTZ00184
    Location:55 → 196
    PTZ00184; calmodulin; Provisional
    cd00051
    Location:61 → 123
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  4. NM_001269505.4 → NP_001256434.1  EF-hand domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256434.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2L2E6
    Conserved Domains (2) summary
    PTZ00184
    Location:51 → 192
    PTZ00184; calmodulin; Provisional
    cd00051
    Location:57 → 119
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  5. NM_001269506.2 → NP_001256435.1  EF-hand domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001256435.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    P90802
    Conserved Domains (2) summary
    PTZ00184
    Location:51 → 192
    PTZ00184; calmodulin; Provisional
    cd00051
    Location:57 → 119
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  6. NM_001356746.3 → NP_001343834.1  EF-hand domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A2C9C351
    Conserved Domains (2) summary
    cd15897
    Location:52 → 79
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:44 → 185
    EFh_PEF; The penta-EF hand (PEF) family
Nucleotide Protein
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