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LOC17879867 basic leucine zipper 19 [ Capsella rubella ]

Gene ID: 17879867, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17879867
Gene description
basic leucine zipper 19
Locus tag
CARUB_v10005538mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238917.1 (1974706..1976875, complement)

NW_006238917.1Genomic Context describing neighboring genes Neighboring gene heavy metal-associated isoprenylated plant protein 25 Neighboring gene WD-40 repeat-containing protein MSI3 Neighboring gene pto-interacting protein 1 Neighboring gene rac-like GTP-binding protein ARAC3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238917 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basic leucine zipper 19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238917.1 Reference Caprub1_0

    Range
    1974706..1976875 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006284304.2 → XP_006284366.1  basic leucine zipper 19

    See identical proteins and their annotated locations for XP_006284366.1

    UniProtKB/TrEMBL
    R0GK70
    Conserved Domains (2) summary
    smart00338
    Location:91 → 152
    BRLZ; basic region leucin zipper
    cd14686
    Location:93 → 146
    bZIP; coiled coil [structural motif]

RNA

  1. XR_002832865.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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