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Myf5 myogenic factor 5 [ Mus musculus (house mouse) ]

Gene ID: 17877, updated on 26-Aug-2014
Official Symbol
Myf5provided by MGI
Official Full Name
myogenic factor 5provided by MGI
Primary source
MGI:97252
See related
Ensembl:ENSMUSG00000000435
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Myf-5; bHLHc2; B130010J22Rik
See Myf5 in Epigenomics, MapViewer
Location:
10 D1; 10 55.95 cM
Exon count:
4
Annotation release Status Assembly Chr Location
104 current GRCm38.p2 (GCF_000001635.22) 10 NC_000076.6 (107482908..107486929, complement)

Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC432500 Neighboring gene lin-7 homolog A (C. elegans) Neighboring gene myogenic factor 6 Neighboring gene protein tyrosine phosphatase, receptor type, Q Neighboring gene uncharacterized LOC102639996

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
camera-type eye development IMP
Inferred from Mutant Phenotype
more info
PubMed 
cartilage condensation IMP
Inferred from Mutant Phenotype
more info
PubMed 
cell differentiation IEA
Inferred from Electronic Annotation
more info
 
embryonic skeletal system morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
extracellular matrix organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organismal development IEA
Inferred from Electronic Annotation
more info
 
muscle organ development IGI
Inferred from Genetic Interaction
more info
PubMed 
muscle organ development IMP
Inferred from Mutant Phenotype
more info
PubMed 
muscle organ morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
muscle tissue morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
muscle tissue morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
ossification IMP
Inferred from Mutant Phenotype
more info
PubMed 
positive regulation of transcription from RNA polymerase II promoter IDA
Inferred from Direct Assay
more info
PubMed 
positive regulation of transcription from RNA polymerase II promoter IMP
Inferred from Mutant Phenotype
more info
 
regulation of cell-matrix adhesion IMP
Inferred from Mutant Phenotype
more info
PubMed 
regulation of transcription from RNA polymerase II promoter TAS
Traceable Author Statement
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
skeletal muscle cell differentiation IMP
Inferred from Mutant Phenotype
more info
 
skeletal muscle tissue development IGI
Inferred from Genetic Interaction
more info
PubMed 
skeletal muscle tissue development IMP
Inferred from Mutant Phenotype
more info
PubMed 
somitogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
transcription from RNA polymerase II promoter TAS
Traceable Author Statement
more info
PubMed 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus TAS
Traceable Author Statement
more info
PubMed 
Preferred Names
myogenic factor 5
Names
myogenic factor 5
myogenic regulatory factor MYF-5

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008656.5NP_032682.1  myogenic factor 5

    See proteins identical to NP_032682.1

    Status: VALIDATED

    Source sequence(s)
    AK044894, AK083402
    Consensus CDS
    CCDS24161.1
    UniProtKB/TrEMBL
    A2RSK4
    UniProtKB/Swiss-Prot
    P24699
    Related
    ENSMUSP00000000445, ENSMUST00000000445
    Conserved Domains (3) summary
    smart00520
    Location:188
    Blast Score: 376
    BASIC; Basic domain in HLH proteins of MYOD family
    cd00083
    Location:83139
    Blast Score: 177
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam12232
    Location:143214
    Blast Score: 237
    Myf5; Myogenic determination factor 5

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p2 C57BL/6J

Genomic

  1. NC_000076.6 

    Range
    107482908..107486929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006513319.1XP_006513382.1  

    See proteins identical to XP_006513382.1

    UniProtKB/TrEMBL
    A2RSK4
    UniProtKB/Swiss-Prot
    P24699
    Conserved Domains (3) summary
    smart00520
    Location:188
    Blast Score: 376
    BASIC; Basic domain in HLH proteins of MYOD family
    cd00083
    Location:83139
    Blast Score: 177
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam12232
    Location:143214
    Blast Score: 237
    Myf5; Myogenic determination factor 5

Alternate Mm_Celera

Genomic

  1. AC_000032.1 

    Range
    109425392..109428623
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)