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LOC17875237 auxin response factor 4 [ Capsella rubella ]

Gene ID: 17875237, updated on 21-Dec-2023

Summary

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Gene symbol
LOC17875237
Gene description
auxin response factor 4
Locus tag
CARUB_v10025912mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsella rubella
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Caprub1_0 (GCF_000375325.1) Unplaced Scaffold NW_006238916.1 (10523379..10527754, complement)

NW_006238916.1Genomic Context describing neighboring genes Neighboring gene E3 SUMO-protein ligase SIZ1 Neighboring gene agamous-like MADS-box protein AGL62 Neighboring gene protein transport protein Sec61 subunit beta Neighboring gene protein indeterminate-domain 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238916 Unplaced Scaffold Reference Caprub1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hormone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
auxin response factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsella rubella Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Caprub1_0

Genomic

  1. NW_006238916.1 Reference Caprub1_0

    Range
    10523379..10527754 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006279969.2 → XP_006280031.1  auxin response factor 4

    See identical proteins and their annotated locations for XP_006280031.1

    UniProtKB/TrEMBL
    R0G8Q0
    Conserved Domains (3) summary
    pfam02309
    Location:671 → 737
    AUX_IAA; AUX/IAA family
    pfam02362
    Location:171 → 272
    B3; B3 DNA binding domain
    pfam06507
    Location:296 → 376
    Auxin_resp; Auxin response factor
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases