rpl-15 Ribosomal Protein, Large subunit [Caenorhabditis elegans] - Gene

Help top of page

Summary

Gene symbol: rpl-15
Gene description: Ribosomal Protein, Large subunit
Primary source: WormBase:WBGene00004427
Locus tag: K11H12.2
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis

Help top of page

Genomic context

Sequence :: Chromosome: IV; NC_003282.6 (653438..654582, complement)

See rpl-15 in MapViewer

Chromosome IV - NC_003282.6 Genomic Context describing neighboring genes

Help top of page

Genomic regions, transcripts, and products

Genomic Sequence

Go to nucleotideGraphics FASTA GenBank

Go to reference sequence details

Help top of page

Bibliography

GeneRIFs: Gene References Into Functions What's a GeneRIF?

Submit: New GeneRIF Correction

Help top of page

Interactions

Products	Interactant	Other Gene	Complex	Source	Pubs	Description
BioGRID:42052	BioGRID:37274	icp-1		BioGRID	PubMed	Two-hybrid

Help top of page

General gene information

Markers

K11H12.2 (e-PCR)
- UniSTS:316064

Homology

Homologs of the rpl-15 gene: The rpl-15 gene is conserved in human, chimpanzee, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, S.pombe, S.cerevisiae, K.lactis, E.gossypii, M.grisea, N.crassa, A.thaliana, rice, and P.falciparum.

Pathways from BioSystems

Cap-dependent Translation Initiation, organism-specific biosystem (from REACTOME)
Cap-dependent Translation Initiation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Cytoplasmic Ribosomal Proteins, organism-specific biosystem (from WikiPathways)
Cytoplasmic Ribosomal Proteins, organism-specific biosystem
Cytoplasmic Ribosomal Proteins
Eukaryotic Translation Elongation, organism-specific biosystem (from REACTOME)
Eukaryotic Translation Elongation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Eukaryotic Translation Initiation, organism-specific biosystem (from REACTOME)
Eukaryotic Translation Initiation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Eukaryotic Translation Termination, organism-specific biosystem (from REACTOME)
Eukaryotic Translation Termination, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Formation of a pool of free 40S subunits, organism-specific biosystem (from REACTOME)
Formation of a pool of free 40S subunits, organism-specific biosystemcomputationally inferred pathway (not manually curated)
GTP hydrolysis and joining of the 60S ribosomal subunit, organism-specific biosystem (from REACTOME)
GTP hydrolysis and joining of the 60S ribosomal subunit, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Gene Expression, organism-specific biosystem (from REACTOME)
Gene Expression, organism-specific biosystemcomputationally inferred pathway (not manually curated)
L13a-mediated translational silencing of Ceruloplasmin expression, organism-specific biosystem (from REACTOME)
L13a-mediated translational silencing of Ceruloplasmin expression, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Metabolism of proteins, organism-specific biosystem (from REACTOME)
Metabolism of proteins, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Peptide chain elongation, organism-specific biosystem (from REACTOME)
Peptide chain elongation, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Ribosome, organism-specific biosystem (from KEGG)
Ribosome, organism-specific biosystem
Ribosome
Ribosome, conserved biosystem (from KEGG)
Ribosome, conserved biosystem
Ribosome
Ribosome, eukaryotes, organism-specific biosystem (from KEGG)
Ribosome, eukaryotes, organism-specific biosystemStructural complex; Genetic information processing; Ribosome
SRP-dependent cotranslational protein targeting to membrane, organism-specific biosystem (from REACTOME)
SRP-dependent cotranslational protein targeting to membrane, organism-specific biosystemcomputationally inferred pathway (not manually curated)
Translation, organism-specific biosystem (from REACTOME)
Translation, organism-specific biosystemcomputationally inferred pathway (not manually curated)

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
structural constituent of ribosome	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
apoptotic process	IMP Inferred from Mutant Phenotype more info
embryo development ending in birth or egg hatching	IMP Inferred from Mutant Phenotype more info	PubMed
growth	IMP Inferred from Mutant Phenotype more info	PubMed
molting cycle, collagen and cuticulin-based cuticle	IMP Inferred from Mutant Phenotype more info	PubMed
nematode larval development	IMP Inferred from Mutant Phenotype more info	PubMed
positive regulation of growth rate	IMP Inferred from Mutant Phenotype more info	PubMed
positive regulation of multicellular organism growth	IMP Inferred from Mutant Phenotype more info	PubMed
reproduction	IMP Inferred from Mutant Phenotype more info	PubMed
translation	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
intracellular	IEA Inferred from Electronic Annotation more info	PubMed
ribosome	IEA Inferred from Electronic Annotation more info	PubMed

Help top of page

General protein information

Names: Ribosomal Protein, Large subunit family member (rpl-15)

Help top of page

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003282.6

Range

653438..654582, complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_067563.3 → NP_499964.1 Ribosomal Protein, Large subunit family member (rpl-15) [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/Swiss-Prot

P91374

Conserved Domains (1) summary

cl02977
Location:2 – 193
Blast Score: 700

Ribosomal_L15e; Ribosomal L15