Format

Send to:

Choose Destination

Msh5 mutS homolog 5 [ Mus musculus (house mouse) ]

Gene ID: 17687, updated on 28-May-2016
Official Symbol
Msh5provided by MGI
Official Full Name
mutS homolog 5provided by MGI
Primary source
MGI:MGI:1329021
See related
Ensembl:ENSMUSG00000007035 Vega:OTTMUSG00000037144
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Mut5
Summary
This gene encodes a member of the MutS family of proteins that play critical roles in DNA mismatch repair and meiotic homologous recombination processes. Mice lacking the encoded protein are viable but sterile, with severe defects in spermatogenesis in males and complete loss of ovarian structures in females. Mutations in a similar gene in humans have been shown to cause common variable immune deficiency (CVID) and immunoglobulin A deficiency. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Jan 2015]
Orthologs
Location:
17 B1; 17 18.57 cM
Exon count:
28
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 17 NC_000083.6 (35028605..35048501, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (35165550..35183668, complement)

Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene valyl-tRNA synthetase Neighboring gene von Willebrand factor A domain containing 7 Neighboring gene suppressor APC domain containing 1 Neighboring gene chloride intracellular channel 1 Neighboring gene dimethylarginine dimethylaminohydrolase 2

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
DNA binding IEA
Inferred from Electronic Annotation
more info
 
mismatched DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
chiasma assembly IBA
Inferred from Biological aspect of Ancestor
more info
 
female gamete generation IMP
Inferred from Mutant Phenotype
more info
PubMed 
meiosis I IMP
Inferred from Mutant Phenotype
more info
PubMed 
meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
 
mismatch repair IBA
Inferred from Biological aspect of Ancestor
more info
 
synapsis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
synaptonemal complex IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
mutS protein homolog 5
Names
DNA mismatch repair protein Msh5

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001146215.2NP_001139687.1  mutS protein homolog 5

    See identical proteins and their annotated locations for NP_001139687.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC087117
    Consensus CDS
    CCDS28674.1
    UniProtKB/Swiss-Prot
    Q9QUM7
    UniProtKB/TrEMBL
    A0A0R4IZY8
    Related
    ENSMUSP00000094951, OTTMUSP00000053378, ENSMUST00000097338, OTTMUST00000095662
    Conserved Domains (3) summary
    cd03281
    Location:556762
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:252568
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224535
    MutS_III; MutS domain III
  2. NM_013600.3NP_038628.2  mutS protein homolog 5

    See identical proteins and their annotated locations for NP_038628.2

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AC087117
    Consensus CDS
    CCDS28674.1
    UniProtKB/Swiss-Prot
    Q9QUM7
    UniProtKB/TrEMBL
    A0A0R4IZY8
    Related
    ENSMUSP00000007250, OTTMUSP00000053377, ENSMUST00000007250, OTTMUST00000095661
    Conserved Domains (3) summary
    cd03281
    Location:556762
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:252568
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224535
    MutS_III; MutS domain III

RNA

  1. NR_130640.1 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site in an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AC087117
    Related
    ENSMUST00000174603, OTTMUST00000095664
  2. NR_130641.1 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) uses an alternate splice site in an internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AC087117
    Related
    ENSMUST00000172536, OTTMUST00000095665

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000083.6 Reference GRCm38.p3 C57BL/6J

    Range
    35028605..35048501 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011246316.1XP_011244618.1  

    See identical proteins and their annotated locations for XP_011244618.1

    Conserved Domains (3) summary
    cd03281
    Location:546752
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:242558
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:214525
    MutS_III; MutS domain III
  2. XM_006523772.2XP_006523835.1  

    See identical proteins and their annotated locations for XP_006523835.1

    Conserved Domains (3) summary
    cd03281
    Location:546752
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:242558
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:214525
    MutS_III; MutS domain III
  3. XM_011246315.1XP_011244617.1  

    See identical proteins and their annotated locations for XP_011244617.1

    Conserved Domains (3) summary
    cd03281
    Location:546752
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:242558
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:214525
    MutS_III; MutS domain III
  4. XM_006523771.2XP_006523834.1  

    See identical proteins and their annotated locations for XP_006523834.1

    Conserved Domains (3) summary
    cd03281
    Location:546752
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:242558
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:214525
    MutS_III; MutS domain III
  5. XM_006523780.2XP_006523843.1  

    See identical proteins and their annotated locations for XP_006523843.1

    Conserved Domains (3) summary
    cd03281
    Location:399605
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:95411
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:67378
    MutS_III; MutS domain III
  6. XM_006523770.1XP_006523833.1  

    See identical proteins and their annotated locations for XP_006523833.1

    Conserved Domains (3) summary
    cd03281
    Location:552758
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:248564
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:220531
    MutS_III; MutS domain III
  7. XM_006523778.1XP_006523841.1  

    See identical proteins and their annotated locations for XP_006523841.1

    Conserved Domains (3) summary
    cd03281
    Location:508714
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:204520
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:176487
    MutS_III; MutS domain III
  8. XM_006523774.1XP_006523837.1  

    See identical proteins and their annotated locations for XP_006523837.1

    Conserved Domains (3) summary
    cd03281
    Location:535741
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:231547
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:203514
    MutS_III; MutS domain III
  9. XM_006523777.1XP_006523840.1  

    See identical proteins and their annotated locations for XP_006523840.1

    Conserved Domains (3) summary
    cd03281
    Location:508714
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:224520
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224487
    MutS_III; MutS domain III
  10. XM_006523773.1XP_006523836.1  

    See identical proteins and their annotated locations for XP_006523836.1

    Conserved Domains (3) summary
    cd03281
    Location:544750
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:240556
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:228523
    MutS_III; MutS domain III
  11. XM_006523776.1XP_006523839.1  

    See identical proteins and their annotated locations for XP_006523839.1

    Conserved Domains (3) summary
    cd03281
    Location:520726
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:236532
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:236499
    MutS_III; MutS domain III
  12. XM_006523775.1XP_006523838.1  

    See identical proteins and their annotated locations for XP_006523838.1

    Conserved Domains (3) summary
    cd03281
    Location:535741
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:252547
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224514
    MutS_III; MutS domain III
  13. XM_011246314.1XP_011244616.1  

    See identical proteins and their annotated locations for XP_011244616.1

    Conserved Domains (3) summary
    cd03281
    Location:555761
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:252567
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224534
    MutS_III; MutS domain III
  14. XM_006523779.1XP_006523842.1  

    See identical proteins and their annotated locations for XP_006523842.1

    Conserved Domains (3) summary
    cd03281
    Location:495701
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:252507
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224474
    MutS_III; MutS domain III
  15. XM_006523781.1XP_006523844.1  

    See identical proteins and their annotated locations for XP_006523844.1

    Conserved Domains (3) summary
    smart00533
    Location:252568
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224535
    MutS_III; MutS domain III
    cl21455
    Location:556604
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
  16. XM_006523783.1XP_006523846.1  

    See identical proteins and their annotated locations for XP_006523846.1

    Conserved Domains (2) summary
    smart00533
    Location:252462
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224430
    MutS_III; MutS domain III

Reference GRCm38.p3 129X1/SvJ

Genomic

  1. NT_039662.3 Reference GRCm38.p3 129X1/SvJ

    Range
    1278298..1298194 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011251364.1XP_011249666.1  

    See identical proteins and their annotated locations for XP_011249666.1

    Conserved Domains (3) summary
    cd03281
    Location:546752
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:242558
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:214525
    MutS_III; MutS domain III
  2. XM_006525334.2XP_006525397.1  

    See identical proteins and their annotated locations for XP_006525397.1

    Conserved Domains (3) summary
    cd03281
    Location:546752
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:242558
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:214525
    MutS_III; MutS domain III
  3. XM_011251363.1XP_011249665.1  

    See identical proteins and their annotated locations for XP_011249665.1

    Conserved Domains (3) summary
    cd03281
    Location:546752
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:242558
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:214525
    MutS_III; MutS domain III
  4. XM_006525333.2XP_006525396.1  

    See identical proteins and their annotated locations for XP_006525396.1

    Conserved Domains (3) summary
    cd03281
    Location:546752
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:242558
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:214525
    MutS_III; MutS domain III
  5. XM_006525342.2XP_006525405.1  

    See identical proteins and their annotated locations for XP_006525405.1

    Conserved Domains (3) summary
    cd03281
    Location:399605
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:95411
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:67378
    MutS_III; MutS domain III
  6. XM_006525332.1XP_006525395.1  

    See identical proteins and their annotated locations for XP_006525395.1

    Conserved Domains (3) summary
    cd03281
    Location:552758
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:248564
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:220531
    MutS_III; MutS domain III
  7. XM_006525340.1XP_006525403.1  

    See identical proteins and their annotated locations for XP_006525403.1

    Conserved Domains (3) summary
    cd03281
    Location:508714
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:204520
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:176487
    MutS_III; MutS domain III
  8. XM_006525336.1XP_006525399.1  

    See identical proteins and their annotated locations for XP_006525399.1

    Conserved Domains (3) summary
    cd03281
    Location:535741
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:231547
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:203514
    MutS_III; MutS domain III
  9. XM_006525339.1XP_006525402.1  

    See identical proteins and their annotated locations for XP_006525402.1

    Conserved Domains (3) summary
    cd03281
    Location:508714
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:224520
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224487
    MutS_III; MutS domain III
  10. XM_006525335.1XP_006525398.1  

    See identical proteins and their annotated locations for XP_006525398.1

    Conserved Domains (3) summary
    cd03281
    Location:544750
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:240556
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:228523
    MutS_III; MutS domain III
  11. XM_006525338.1XP_006525401.1  

    See identical proteins and their annotated locations for XP_006525401.1

    Conserved Domains (3) summary
    cd03281
    Location:520726
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:236532
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:236499
    MutS_III; MutS domain III
  12. XM_006525337.1XP_006525400.1  

    See identical proteins and their annotated locations for XP_006525400.1

    Conserved Domains (3) summary
    cd03281
    Location:535741
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:252547
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224514
    MutS_III; MutS domain III
  13. XM_011251362.1XP_011249664.1  

    See identical proteins and their annotated locations for XP_011249664.1

    Conserved Domains (3) summary
    cd03281
    Location:555761
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:252567
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224534
    MutS_III; MutS domain III
  14. XM_006525341.1XP_006525404.1  

    See identical proteins and their annotated locations for XP_006525404.1

    Conserved Domains (3) summary
    cd03281
    Location:495701
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:252507
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224474
    MutS_III; MutS domain III
  15. XM_006525343.1XP_006525406.1  

    See identical proteins and their annotated locations for XP_006525406.1

    Conserved Domains (3) summary
    smart00533
    Location:252568
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224535
    MutS_III; MutS domain III
    cl21455
    Location:556604
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
  16. XM_006525345.1XP_006525408.1  

    See identical proteins and their annotated locations for XP_006525408.1

    Conserved Domains (2) summary
    smart00533
    Location:252462
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224430
    MutS_III; MutS domain III

Reference GRCm38.p3 NOD/MrkTac

Genomic

  1. NT_187027.1 Reference GRCm38.p3 NOD/MrkTac

    Range
    1346771..1366667 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011251296.1XP_011249598.1  

    See identical proteins and their annotated locations for XP_011249598.1

    Conserved Domains (3) summary
    cd03281
    Location:546752
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:242558
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:214525
    MutS_III; MutS domain III
  2. XM_006537289.2XP_006537352.1  

    See identical proteins and their annotated locations for XP_006537352.1

    Conserved Domains (3) summary
    cd03281
    Location:546752
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:242558
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:214525
    MutS_III; MutS domain III
  3. XM_011251295.1XP_011249597.1  

    See identical proteins and their annotated locations for XP_011249597.1

    Conserved Domains (3) summary
    cd03281
    Location:546752
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:242558
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:214525
    MutS_III; MutS domain III
  4. XM_006537288.2XP_006537351.1  

    See identical proteins and their annotated locations for XP_006537351.1

    Conserved Domains (3) summary
    cd03281
    Location:546752
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:242558
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:214525
    MutS_III; MutS domain III
  5. XM_006537297.2XP_006537360.1  

    See identical proteins and their annotated locations for XP_006537360.1

    Conserved Domains (3) summary
    cd03281
    Location:399605
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:95411
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:67378
    MutS_III; MutS domain III
  6. XM_006537287.1XP_006537350.1  

    See identical proteins and their annotated locations for XP_006537350.1

    Conserved Domains (3) summary
    cd03281
    Location:552758
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:248564
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:220531
    MutS_III; MutS domain III
  7. XM_006537295.1XP_006537358.1  

    See identical proteins and their annotated locations for XP_006537358.1

    Conserved Domains (3) summary
    cd03281
    Location:508714
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:204520
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:176487
    MutS_III; MutS domain III
  8. XM_006537291.1XP_006537354.1  

    See identical proteins and their annotated locations for XP_006537354.1

    Conserved Domains (3) summary
    cd03281
    Location:535741
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:231547
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:203514
    MutS_III; MutS domain III
  9. XM_006537294.1XP_006537357.1  

    See identical proteins and their annotated locations for XP_006537357.1

    Conserved Domains (3) summary
    cd03281
    Location:508714
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:224520
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224487
    MutS_III; MutS domain III
  10. XM_006537290.1XP_006537353.1  

    See identical proteins and their annotated locations for XP_006537353.1

    Conserved Domains (3) summary
    cd03281
    Location:544750
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:240556
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:228523
    MutS_III; MutS domain III
  11. XM_006537293.1XP_006537356.1  

    See identical proteins and their annotated locations for XP_006537356.1

    Conserved Domains (3) summary
    cd03281
    Location:520726
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:236532
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:236499
    MutS_III; MutS domain III
  12. XM_006537292.1XP_006537355.1  

    See identical proteins and their annotated locations for XP_006537355.1

    Conserved Domains (3) summary
    cd03281
    Location:535741
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:252547
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224514
    MutS_III; MutS domain III
  13. XM_011251294.1XP_011249596.1  

    See identical proteins and their annotated locations for XP_011249596.1

    Conserved Domains (3) summary
    cd03281
    Location:555761
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:252567
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224534
    MutS_III; MutS domain III
  14. XM_006537296.1XP_006537359.1  

    See identical proteins and their annotated locations for XP_006537359.1

    Conserved Domains (3) summary
    cd03281
    Location:495701
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:252507
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224474
    MutS_III; MutS domain III
  15. XM_006537298.1XP_006537361.1  

    See identical proteins and their annotated locations for XP_006537361.1

    Conserved Domains (3) summary
    smart00533
    Location:252568
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224535
    MutS_III; MutS domain III
    cl21455
    Location:556604
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
  16. XM_006537300.1XP_006537363.1  

    See identical proteins and their annotated locations for XP_006537363.1

    Conserved Domains (2) summary
    smart00533
    Location:252462
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224430
    MutS_III; MutS domain III

Reference GRCm38.p3 NOD/ShiLtJ

Genomic

  1. NT_187004.1 Reference GRCm38.p3 NOD/ShiLtJ

    Range
    1347010..1366906 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011238706.1XP_011237008.1  

    See identical proteins and their annotated locations for XP_011237008.1

    Conserved Domains (3) summary
    cd03281
    Location:546752
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:242558
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:214525
    MutS_III; MutS domain III
  2. XM_006536557.2XP_006536620.1  

    See identical proteins and their annotated locations for XP_006536620.1

    Conserved Domains (3) summary
    cd03281
    Location:546752
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:242558
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:214525
    MutS_III; MutS domain III
  3. XM_011238681.1XP_011236983.1  

    See identical proteins and their annotated locations for XP_011236983.1

    Conserved Domains (3) summary
    cd03281
    Location:546752
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:242558
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:214525
    MutS_III; MutS domain III
  4. XM_006536556.2XP_006536619.1  

    See identical proteins and their annotated locations for XP_006536619.1

    Conserved Domains (3) summary
    cd03281
    Location:546752
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:242558
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:214525
    MutS_III; MutS domain III
  5. XM_006536565.2XP_006536628.1  

    See identical proteins and their annotated locations for XP_006536628.1

    Conserved Domains (3) summary
    cd03281
    Location:399605
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:95411
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:67378
    MutS_III; MutS domain III
  6. XM_006536555.1XP_006536618.1  

    See identical proteins and their annotated locations for XP_006536618.1

    Conserved Domains (3) summary
    cd03281
    Location:552758
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:248564
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:220531
    MutS_III; MutS domain III
  7. XM_006536562.1XP_006536625.1  

    See identical proteins and their annotated locations for XP_006536625.1

    Conserved Domains (3) summary
    cd03281
    Location:508714
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:204520
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:176487
    MutS_III; MutS domain III
  8. XM_006536559.1XP_006536622.1  

    See identical proteins and their annotated locations for XP_006536622.1

    Conserved Domains (3) summary
    cd03281
    Location:535741
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:231547
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:203514
    MutS_III; MutS domain III
  9. XM_006536563.1XP_006536626.1  

    See identical proteins and their annotated locations for XP_006536626.1

    Conserved Domains (3) summary
    cd03281
    Location:508714
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:224520
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224487
    MutS_III; MutS domain III
  10. XM_006536558.1XP_006536621.1  

    See identical proteins and their annotated locations for XP_006536621.1

    Conserved Domains (3) summary
    cd03281
    Location:544750
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:240556
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:228523
    MutS_III; MutS domain III
  11. XM_006536561.1XP_006536624.1  

    See identical proteins and their annotated locations for XP_006536624.1

    Conserved Domains (3) summary
    cd03281
    Location:520726
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:236532
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:236499
    MutS_III; MutS domain III
  12. XM_006536560.1XP_006536623.1  

    See identical proteins and their annotated locations for XP_006536623.1

    Conserved Domains (3) summary
    cd03281
    Location:535741
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:252547
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224514
    MutS_III; MutS domain III
  13. XM_011238629.1XP_011236931.1  

    See identical proteins and their annotated locations for XP_011236931.1

    Conserved Domains (3) summary
    cd03281
    Location:555761
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:252567
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224534
    MutS_III; MutS domain III
  14. XM_006536564.1XP_006536627.1  

    See identical proteins and their annotated locations for XP_006536627.1

    Conserved Domains (3) summary
    cd03281
    Location:495701
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:252507
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224474
    MutS_III; MutS domain III
  15. XM_006536566.1XP_006536629.1  

    See identical proteins and their annotated locations for XP_006536629.1

    Conserved Domains (3) summary
    smart00533
    Location:252568
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224535
    MutS_III; MutS domain III
    cl21455
    Location:556604
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
  16. XM_006536568.1XP_006536631.1  

    See identical proteins and their annotated locations for XP_006536631.1

    Conserved Domains (2) summary
    smart00533
    Location:252462
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:224430
    MutS_III; MutS domain III

Alternate Mm_Celera

Genomic

  1. AC_000039.1 Alternate Mm_Celera

    Range
    38124846..38143458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)