F56A8.3 Leucine-rich repeat domain, L domain-like;Transmembrane protein [Caenorhabditis elegans] - Gene

Summary

Go to the top of the page Help

Gene symbol: F56A8.3
Gene description: Leucine-rich repeat domain, L domain-like;Transmembrane protein
Primary source: WormBase:WBGene00010139
Locus tag: CELE_F56A8.3
See related: AllianceGenome:WB:WBGene00010139
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in intestine; neurons; pharynx; and rectal gland cell. Orthologous to human LRRC59 (leucine rich repeat containing 59). [provided by Alliance of Genome Resources, Apr 2022]
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help

See F56A8.3 in Genome Data Viewer

Location:: chromosome: III

Exon count:: 9

Sequence:: Chromosome: III; NC_003281.10 (13256880..13262905)

Chromosome III - NC_003281.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help

Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

Go to the top of the page Help

Markers

F56A8.2 (e-PCR)
- UniSTS:316811

F56A8.3 (e-PCR)
- UniSTS:319418

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: Leucine-rich repeat domain, L domain-like;Transmembrane protein

NP_001366989.1

Confirmed by transcript evidence

NP_499731.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003281.10 Reference assembly

Range

13256880..13262905

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001379979.2 → NP_001366989.1 Leucine-rich repeat domain, L domain-like [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

Q95ZS5

Conserved Domains (3) summary

PTZ00121
Location:135 → 242

PTZ00121; MAEBL; Provisional

COG4886
Location:7 → 128

LRR; Leucine-rich repeat (LRR) protein [Transcription]

sd00031
Location:19 → 39

LRR_1; leucine-rich repeat [structural motif]
NM_067330.6 → NP_499731.1 Transmembrane protein [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_499731.1

Status: REVIEWED

UniProtKB/TrEMBL

O45574