U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

wht-7 ABC transporter domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 175864, updated on 11-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
wht-7
Gene description
ABC transporter domain-containing protein
Primary source
WormBase:WBGene00021535
Locus tag
CELE_Y42G9A.6
See related
AllianceGenome:WB:WBGene00021535
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable ABC-type transporter activity and ATP binding activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human ABCG1 (ATP binding cassette subfamily G member 1) and ABCG4 (ATP binding cassette subfamily G member 4). [provided by Alliance of Genome Resources, Apr 2022]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: III
Exon count:
11
Sequence:
Chromosome: III; NC_003281.10 (6141957..6149597, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Glycylpeptide N-tetradecanoyltransferase;putative glycylpeptide N-tetradecanoyltransferase Neighboring gene Serine/threonine-protein kinase SULU Neighboring gene GHMP kinase C-terminal domain-containing protein;MeValonate Kinase;Mevalonate kinase Neighboring gene L domain-like protein;Leucine-rich repeat-containing protein 58 Neighboring gene Secreted protein Neighboring gene ncRNA Neighboring gene Nbl1_Borealin_N domain-containing protein Neighboring gene ncRNA Neighboring gene Nicotinamide N-methyltransferase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. ATP-binding cassette transporters are required for efficient RNA interference in Caenorhabditis elegans. Sundaram P, et al. Mol Biol Cell, 2006 Aug. PMID 16723499, Free PMC Article
  2. Caenorhabditis elegans ABCRNAi transporters interact genetically with rde-2 and mut-7. Sundaram P, et al. Genetics, 2008 Feb. PMID 18245353, Free PMC Article
  3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  4. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  5. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATPase-coupled transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
ABC transporter domain-containing protein
NP_001367851.1
  • Confirmed by transcript evidence
NP_001367852.1
  • Confirmed by transcript evidence
NP_001391160.1
  • Confirmed by transcript evidence
NP_001391161.1
  • Confirmed by transcript evidence
NP_001391162.1
  • Confirmed by transcript evidence
NP_001391163.1
  • Confirmed by transcript evidence
NP_001391164.1
  • Confirmed by transcript evidence
NP_001391165.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    6141957..6149597 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001404163.1 → NP_001391163.1  ABC transporter domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8S4QFC8

  2. NM_001379747.1 → NP_001367851.1  ABC transporter domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2L028
    Conserved Domains (1) summary
    TIGR00955
    Location:40 → 664
    3a01204; The Eye Pigment Precursor Transporter (EPP) Family protein

  3. NM_001404160.1 → NP_001391160.1  ABC transporter domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8S4QGL9

  4. NM_001404161.1 → NP_001391161.1  ABC transporter domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8S4Q9J2

  5. NM_001404162.1 → NP_001391162.1  ABC transporter domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8S4QAZ9

  6. NM_001404164.1 → NP_001391164.1  ABC transporter domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8S4QD72

  7. NM_001379748.1 → NP_001367852.1  ABC transporter domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A9R9
    Conserved Domains (1) summary
    TIGR00955
    Location:1 → 527
    3a01204; The Eye Pigment Precursor Transporter (EPP) Family protein

  8. NM_001404165.1 → NP_001391165.1  ABC transporter domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8S4QBW8
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools
Miscellaneous