luc-7L LUC7 related splicing factor homolog [Caenorhabditis elegans] - Gene

Summary

Go to the top of the page Help

Gene symbol: luc-7L
Gene description: LUC7 related splicing factor homolog
Primary source: WormBase:WBGene00015207
Locus tag: CELE_B0495.8
See related: AllianceGenome:WB:WBGene00015207
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site selection. Predicted to be part of U1 snRNP and U2-type prespliceosome. Orthologous to human LUC7L (LUC7 like) and LUC7L2 (LUC7 like 2, pre-mRNA splicing factor). [provided by Alliance of Genome Resources, Apr 2022]
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help

Location:: chromosome: II

Exon count:: 8

Sequence:: Chromosome: II; NC_003280.10 (7705533..7707483, complement)

Chromosome II - NC_003280.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help

Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

Go to the top of the page Help

Markers

B0495.9 (e-PCR)
- UniSTS:308861

B0495.8 (e-PCR)
- UniSTS:308395

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables mRNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables mRNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in mRNA splice site recognition	IBA Inferred from Biological aspect of Ancestor more info
involved_in mRNA splice site recognition	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of U1 snRNP	IBA Inferred from Biological aspect of Ancestor more info
part_of U1 snRNP	IEA Inferred from Electronic Annotation more info
part_of U2-type prespliceosome	IBA Inferred from Biological aspect of Ancestor more info

General protein information

Go to the top of the page Help

Preferred Names: LUC7 related splicing factor homolog

NP_741025.1

Confirmed by transcript evidence;
Product from WormBase gene class luc

NP_741026.1

Confirmed by transcript evidence;
Product from WormBase gene class luc

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003280.10 Reference assembly

Range

7705533..7707483 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_171023.4 → NP_741026.1 LUC7 related splicing factor homolog [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_741026.1

Status: REVIEWED

UniProtKB/TrEMBL

G8JXY3

Conserved Domains (1) summary

COG5200
Location:1 → 56

LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
NM_171022.6 → NP_741025.1 LUC7 related splicing factor homolog [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_741025.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q09217

Conserved Domains (2) summary

COG5200
Location:1 → 245

LUC7; U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

pfam03194
Location:3 → 246

LUC7; LUC7 N_terminus