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Y49F6B.2 Fcf2 pre-rRNA processing C-terminal domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 173696, updated on 11-Apr-2024

Summary

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Gene symbol
Y49F6B.2
Gene description
Fcf2 pre-rRNA processing C-terminal domain-containing protein
Primary source
WormBase:WBGene00021715
Locus tag
CELE_Y49F6B.2
See related
AllianceGenome:WB:WBGene00021715
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in RNA processing. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human DNTTIP2 (deoxynucleotidyltransferase terminal interacting protein 2). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
chromosome: II
Exon count:
5
Sequence:
Chromosome: II; NC_003280.10 (3502968..3504910)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene RBR-type E3 ubiquitin transferase Neighboring gene Cuticle collagen 71 Neighboring gene ncRNA Neighboring gene Cyclin-H Neighboring gene ncRNA Neighboring gene TransThyretin-Related family domain Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in RNA processing IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Fcf2 pre-rRNA processing C-terminal domain-containing protein
NP_494563.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    3502968..3504910
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_062162.8 → NP_494563.1  Fcf2 pre-rRNA processing C-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_494563.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N4U1
    Conserved Domains (1) summary
    pfam08698
    Location:121 → 214
    Fcf2; Fcf2 pre-rRNA processing
Nucleotide Protein
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